Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002515.1 Kokia drynarioides strain JFW-HI SEQ_114681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1355
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36


Found at i:587 original size:18 final size:20

Alignment explanation


    Indices: 564--602  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        554 ACCAACTATT

                                
        564 ATAATA-AAATA-CACATTA
          1 ATAATACAAATATCACATTA

                    *           
        582 ATAATACATATATCACATTA
          1 ATAATACAAATATCACATTA

             
        602 A
          1 A

        603 ATATTTTATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18    6  0.33
  19    4  0.22
  20    8  0.44

ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31


Consensus pattern (20 bp):   
ATAATACAAATATCACATTA
Done.