Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002520.1 Kokia drynarioides strain JFW-HI SEQ_114688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11248
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Found at i:379 original size:216 final size:215
Alignment explanation
Indices: 5--1077 Score: 1225
Period size: 216 Copynumber: 5.0 Consensus size: 215
1 AGTA
* * * * * *
5 CAAAGACCAAAGCTTGTTTGCAAAATGATAAACAATATAGACCAAATGATGCGATTTCCCAAGCA
1 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
* ** * * * * * *
70 TGGAATGTTCGAAAAGTTGTTCGAAAGAATAGATCGTCTTCAATACTTTAAGTATCCGATGTTAT
66 TGGAATGTTCGAAAAATTGCCCTAAAGAATAGATCGTGTTGAATACTTTAAGAAT-CGAAGTTAA
* *
135 AGAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGGGAGAAACAATTCT
130 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
200 GACGTAAATAAGTATTTAATT
195 CACGTAAATAAGTATTTAATT
** * * *
221 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCTCGAGCG
1 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
* * * * * * *
286 TGGAATGTTCCG-AAATTTGCCCTAAGGAATGGTTCTTGTTGAATTCTTTAGGGAATCGAAGTTA
66 TGGAATGTT-CGAAAAATTGCCCTAAAGAATAGATCGTGTTGAATACTTTA-AGAATCGAAGTTA
* * * *
350 AAAAATAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTC
129 AAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * *
415 TAACGTAAATAAATTTTTAATT
194 TCACGTAAATAAGTATTTAATT
* * * *
437 CAAAGGCCAAAACTTGTTTGCGAAATGATAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
1 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
* * * *
502 TGGAATGTTCGAAAAATTGTTCC-AAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTA
66 TGGAATGTTCGAAAAATTG-CCCTAAAGAATAGATCGTGTTGAATACTTTAAGAAT-CGAAGTTA
* * * *
566 TAGAAGAACTAGTTAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
129 AAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
*
631 TCACGTAAATAAGTTTTTTAATT
194 TCACGTAAATAAG-TATTTAATT
* * * * *
654 CAAAGACCAAAACTTGTTTGCAAAATGATAAAATATTTAGACCAAATGATGCGATTCCACAAACA
1 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
** * * * * * *
719 TGGAATGTTCGAAAAATTGTTCGAAAGAATAGATCGTATTGAATTCTTTAAGTATCTGATGTTAT
66 TGGAATGTTCGAAAAATTGCCCTAAAGAATAGATCGTGTTGAATACTTTAAGAATC-GAAGTTAA
* * *
784 AGAAGAACTAGTAAAAGTTGGACAAGTTCGAAAGTTCGTCCAAGAACAAACAGAGAAACAATTCT
130 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
849 CACGTAAATAAGTATTTAATT
195 CACGTAAATAAGTATTTAATT
* * ** *
870 CAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTATACCAAATGATTTGATTTC-CTGAGC
1 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAC-AAGC
* * * * * * * ** *
934 ATGGAATGTTCGAAAATTTGCTCTAAGGAATGGATCTTGTTGAAAACTTTACGGAGCCAAAGTTA
65 ATGGAATGTTCGAAAAATTGCCCTAAAGAATAGATCGTGTTGAATACTTTA-AGAATCGAAGTTA
* * * * * * * *
999 AAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCCTCTAGAAAACAAAGAGAGAAACAATT
129 AAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA-AGAACAAAGAGAGAAACAATT
*
1064 CTCATGTAAATAAG
193 CTCACGTAAATAAG
1078 GATATGAATT
Statistics
Matches: 731, Mismatches: 115, Indels: 21
0.84 0.13 0.02
Matches are distributed among these distances:
215 6 0.01
216 485 0.66
217 240 0.33
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
TGGAATGTTCGAAAAATTGCCCTAAAGAATAGATCGTGTTGAATACTTTAAGAATCGAAGTTAAA
AAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
ACGTAAATAAGTATTTAATT
Found at i:916 original size:433 final size:431
Alignment explanation
Indices: 5--1077 Score: 1385
Period size: 433 Copynumber: 2.5 Consensus size: 431
1 AGTA
* * *
5 CAAAGACCAAAGCTTGTTTGCAAAATGATAAACAATATAGACCAAATGATGCGATTTCCCAAGCA
1 CAAAGACCAAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGATTT-CCAAGCA
* * *
70 TGGAATGTTCGAAAAGTTGTTCGAAAGAATAGATCGTCTTCAATACTTTAAGTATCCGATGTTAT
65 TGGAATGTTCGAAAAATTGTTCCAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTAT
* *
135 AGAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGGGAGAAACAATTCT
130 AGAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* *
200 GACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
195 CACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACCA
** * * * * * * * * * * * *
265 AATGATTTGATTTCTCGAGCGTGGAATGTTCCGAAATTTGCCCTAAGGAATGGTTCTTGTTGAAT
260 AATGATGCGATTCCACAAACATGGAATGTTCCGAAAATTGCCCGAAAGAATAGATCGTATTGAAT
* * * *
330 TCTTTAGGGAATCGAAGTTAAAAAATAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCATCCAAG
325 TCTTTAGAGAATCGAAGTTAAAAAAGAACTAGTAAAAGTTGAACAAGTTCGAAAGTTCATCCAAG
* *
395 AACAAAGAGAGAAACAATTCTAACGTAAATAAATTTTTAATT
390 AACAAACAGAGAAACAATTCTAACGTAAATAAATATTTAATT
* *
437 CAAAGGCCAAAACTTGTTTGCGAAATGATAAACTATTTAGACCAAATGATGCGATTTCACAAGCA
1 CAAAGACCAAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGATTTC-CAAGCA
502 TGGAATGTTCGAAAAATTGTTCCAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTAT
65 TGGAATGTTCGAAAAATTGTTCCAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTAT
*
567 AGAAGAACTAGTTAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
130 AGAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * *
632 CACGTAAATAAGTTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGATAAAATATTTAGACC
195 CACGTAAATAAG-TATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACC
**
697 AAATGATGCGATTCCACAAACATGGAATGTT-CGAAAAATTGTTCGAAAGAATAGATCGTATTGA
259 AAATGATGCGATTCCACAAACATGGAATGTTCCG-AAAATTGCCCGAAAGAATAGATCGTATTGA
* * * * * *
761 ATTCTTTA-AGTATCTGATGTTATAGAAGAACTAGTAAAAGTTGGACAAGTTCGAAAGTTCGTCC
323 ATTCTTTAGAGAATC-GAAGTTAAAAAAGAACTAGTAAAAGTTGAACAAGTTCGAAAGTTCATCC
* *
825 AAGAACAAACAGAGAAACAATTCTCACGTAAATAAGTATTTAATT
387 AAGAACAAACAGAGAAACAATTCTAACGTAAATAAATATTTAATT
* * * * ** *
870 CAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTATACCAAATGATTTGATTTCCTGAGCA
1 CAAAGACCAAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGATTTCC-AAGCA
* * * * * * * * * * * * * *
935 TGGAATGTTCGAAAATTTGCTCTAAGGAATGGATCTTGTTGAAAACTTTACGGAGCCAAAGTTAA
65 TGGAATGTTCGAAAAATTGTTCCAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTAT
* * * * * * * *
1000 AAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCCTCTAGAAAACAAAGAGAGAAACAATTC
130 AGAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AGAACAAAGAGAGAAACAATTC
*
1065 TCATGTAAATAAG
194 TCACGTAAATAAG
1078 GATATGAATT
Statistics
Matches: 556, Mismatches: 79, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
431 1 0.00
432 200 0.36
433 322 0.58
434 33 0.06
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (431 bp):
CAAAGACCAAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCAAGCAT
GGAATGTTCGAAAAATTGTTCCAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTATA
GAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
ACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACCAA
ATGATGCGATTCCACAAACATGGAATGTTCCGAAAATTGCCCGAAAGAATAGATCGTATTGAATT
CTTTAGAGAATCGAAGTTAAAAAAGAACTAGTAAAAGTTGAACAAGTTCGAAAGTTCATCCAAGA
ACAAACAGAGAAACAATTCTAACGTAAATAAATATTTAATT
Found at i:1801 original size:28 final size:24
Alignment explanation
Indices: 1747--1797 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
1737 AAACAACTTC
*
1747 TAAAAAAAAATCAAGAGAAATTCT
1 TAAAAAAAAATCAAGAGAAATTAT
*
1771 TAAAGAAAAACTCAA-AGAGAATTAT
1 TAAA-AAAAAATCAAGAGA-AATTAT
1796 TA
1 TA
1798 TTAACTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.61, C:0.08, G:0.10, T:0.22
Consensus pattern (24 bp):
TAAAAAAAAATCAAGAGAAATTAT
Found at i:3179 original size:216 final size:216
Alignment explanation
Indices: 2627--9324 Score: 5183
Period size: 216 Copynumber: 30.8 Consensus size: 216
2617 GACTCGTATT
* * * * * * *
2627 AGAACTGTTTCTCACTTTCTTCATGGACGATCTTTCGAACTTGTCAAACTTTTACGATTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * *
2692 TTAACATCGGTTCCTTAAAGTCTTCAACAAGATCCATTCCTTAGAGAAATTTTCCGAACATTCCT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* *
2757 TACTCGAGAAATCGTATCATTTGGTCT-AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
131 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
*
2821 AATTAAGAACTTATTTACGTG
196 AATTAAAAACTTATTTACGTG
** * * *
2842 AGAATTGTTTCTCTCTTTGTTCTTCTACGAACTTCCCAACTTGTCAAACTTTTACTAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
** * * *
2907 ATAACTTCGAATCCTTAAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTCGAGCATTCC
66 ATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCC
* * * * *
2972 ATGCTCGAGAAATCACATCATTTGGTCTAATTAGTTTGTAATTTTGTAAATAAGTTTTAGTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
**
3037 GAATTAAAAACTTGCTTACGTG
195 GAATTAAAAACTTATTTACGTG
* * * *
3059 ATAATTTTTTCTCTCTTTGTTCATGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
***
3124 ATAACTTTTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * ** *
3189 CGCTCGAGAACTCAAATCATTTGGTC-AGAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTT
131 TGCTCGAGAAATCGCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
3253 GAATTATAAACTTCTTTACGTG
195 GAATTAAAAACTTATTTACGTG
* * * *
3275 AGAATTTTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTATCAAACTTTTACGAGTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** ** * *
3340 TTAAGTTCGGTTCCTTAAAGTATTCACGAATATCCATTCCCACGAGTAATTTTCCGAACATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * *
3405 TGCTC-AGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTTTTT
131 TGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
3469 GAATTAAAAACTTATTTACGTG
195 GAATTAAAAACTTATTTACGTG
* *
3491 AG-A--------CT-TGT-TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
3545 ATAACTTCTGGTT-CTTAAAGTATTCAAGACGTTCAATGTTCCATCGAGCAATATTTCGAGCAAT
66 ATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCA--TTCCTTCGAGCAATTTTTCGAACATT
* * * * *
3609 CCATGCTCGGGGAATCACATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCT
128 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * *
3674 TTAAATTAAAATCTTATTAACCTT
193 TTGAATTAAAAACTTATTTACGTG
* * *
3698 AGAATTATTTCTCTCTTGGTTCAT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * *
3755 ATAGCTTTTTGGTTCCTTAATGTATTCAAGACGATCCAATCCTACGCGTAACTTTCCG-A-A--C
66 ATAAC--TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * * * *
3816 CATGCTCGGGAAATCGCATCCTATGGTCTAAATAGTTTTTCATTTTGCAAACAAGTTTTTGTCTT
129 CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
3881 TGGATTAAAAACTTATTTCCTTA
194 TGAATTAAAAACTTATTTACGTG
* * * * *
3904 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCACACTTGTTAAACTTGTACGAGTTCTTA
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTT
* ** * * *
3968 TATAAATTTTGTTCCTTAAAATATTCAAGACAATTCC-TTCCTTTCGAGCAATTTTTTGAACATT
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCC-TTCGAGCAATTTTTCGAACATT
* * * * *
4032 CCACGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGTCT
128 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
4097 TTGAATTAAAAACTTATTTACGTG
193 TTGAATTAAAAACTTATTTACGTG
* * * * *
4121 TGAATTGTTTCTCTCTTGGTACTTGGAC-AGACTTCCGAACTTGTCAAACTTTTATGAGTTCTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGA-ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * * *
4185 TATAACTTCAGTTCCTTAAAGTATACATGATGATCCATTCCTTCGA-AAAATTTTCTGAACTTTT
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTC
* * * * * * * *
4249 CATGCTTG-GAAAGTCACATCATTTCGTCTAAATAGTTAGTCACTTTGCAAAAAAGTTTTAGTCT
129 CATGCTCGAGAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
4313 TTGAATTAAAAACTTATTTACGTG
193 TTGAATTAAAAACTTATTTACGTG
* * * * * * * *
4337 AGAATTCTTTCTCTCTTGGTTCATGGAAGAACTTCCGAACTTGTCAAACTTTTAGGAGATCTATT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
4402 ATAACTTCGCTTCCTTAAAGTATTCAAGTC-AGTCCATTCCTTCGAGCAATTTTTTGAACATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCC
* * * * * *
4466 AAGCTGGGGAAATCGCATCATTTGGTGTAAATAATTTGTCATTTTGTAAACAAGTTTTGTTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
4531 GAATTAAAAATTTATTTACATG
195 GAATTAAAAACTTATTTACGTG
* * * *
4553 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCTAACTTCTACTAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* ** ** *
4618 ATAACTTCGGATCCTTAAAGTATTCAAGAATATCCATTCCTTTTAGAAATTTTTC-AAGCATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCC
* * * * * *
4682 ATGTTTGGGAAATCGCATAATTTAGTCTAAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
4747 GAATTAAAAACTT-TTGGGAAATCACATAATTT
195 GAATTAAAAACTTATT------T-AC----GTG
* * *
4779 AGTCTAAATTGTTTCTCTCTTTATTGTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTC
1 AG----AATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC
* * *
4844 TATTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCATTCCGTT-GAGCAATTTTTCGATCA
62 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACA
* * * *
4908 TTCTACGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGGTTTGGT
126 TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
4972 CTTTGAATTATAAACTTTTTTACGTG
191 CTTTGAATTAAAAACTTATTTACGTG
* * * *
4998 AGAATTGTTTATCTCTTTGTTCTTGCACGAACTTCCGAACTTG-CAAAACTTTTACGAGTTATTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTTCTTT
* * *** *
5062 TTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCAAGAGCAATTTTTCGAACATTTC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCC
* * * *
5127 ATGCTCAAGAAATAGCATCATTTGGTCT-AATAGTTTGTCATTTTGTAATCAAGTTTTGTTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
*
5191 GAATTAAAAACTTATTTACATG
195 GAATTAAAAACTTATTTACGTG
* * * * * *
5213 AGAATTGTTTCTCTCTTTCTTCATGGACGAACTTTCCAACTTGTCAAACTTTTAAGATTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
5278 -TAACTTCAGTTCCTTAAAGTATTCAACAGGATCCATTCATTAGAGCAA-TTTTCTGAACATTTC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCC
* * *
5341 TTACTCGAGAAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
*
5406 GAATTAAGAACTTATTTACGTG
195 GAATTAAAAACTTATTTACGTG
* * ** * * *
5428 AGAATTGTTACTCTCTTTGTGCTTTTACGAACTTCCCAACTTGTCAAACTTTTACTAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
5493 ATAACTTCGGATCCTTAAAGTATTCAAGACGATCCA----TTC---C----TTT-GAGCATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* *
5546 TGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTT
131 TGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
5610 GAATTATAAACTTCTTTACGTG
195 GAATTAAAAACTTATTTACGTG
* *
5632 AGAATT-TTT-TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** ** * *
5695 TTAACTTCGTTTCCTTAAAGTATTCATGAATATCCATTCCCACGAGTAATCTTTCGAACATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * *
5760 TGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTG
131 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* * *
5825 AATTATAAACTTTTTTACATG
196 AATTAAAAACTTATTTACGTG
* * * * * *
5846 AGAATTGATTATCTCTTTGTTCTTGCACGAACTTCCGAACTTG-CGAAACTTTTACGGGTTATTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTT-CTT
* * * * ** *
5910 TTTTAACTTCGGTTCCTTAAACTATTCAAGAAGATCCTTTCCTAAGAGCAATTTTTCGAACATTT
64 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * *
5975 CATGCTCAAGAAATAGCATCATTTGGTCT-AATAGTTTGTCATTTTGTAATCAAGTTTTGTTCTT
129 CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
*
6039 TGAATTAAAAACTTATTTACATG
194 TGAATTAAAAACTTATTTACGTG
* * * * *
6062 AGAATTGTTTCTCTCTTTCTTCATGGACGAACTTTCGAACTTGTCAAACTTTTAAGATTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * *
6127 TTAACTTCGGTTCCTTAAAGTATTCAACAGGATCCATTCCTTAGAGTAATTTTTCGAACATTTCT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * * *
6192 TACTCGAGAAATCGCATCATTTGGTCTAAATAGTTAGTCATTTTGTAAACAAGTTTTGCTCTTTT
131 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* *
6257 AATTAAGAACTTA-TAACGTG
196 AATTAAAAACTTATTTACGTG
*** * * * *
6277 AGAATTGTTTCTCTCTTTGTTCTCCTATGAACTTCCAAACTTGTCAAACTTTTACTAGTTC-TTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
6341 ATAACTTCGGATCCTTAAAGTATTCAAGATGATCCATTCCTTC--G--A------G--CATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * *
6394 TGCTCGGGAATTCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
131 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* *
6459 AATTATAAACTTCTTTACGTG
196 AATTAAAAACTTATTTACGTG
* * * *
6480 AGAATTTTTTCTCTCTTTATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** * * **
6545 TTAACTTCGTTTCCTTAAAGTATTCACGAATATCCATTCCCAT-GAGTAACCTTTCGAACATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CCTTCGAGCAATTTTTCGAACATTCC
* * * *
6609 ATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTT
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
6674 GAATTAAAAACTTATTTACGTG
195 GAATTAAAAACTTATTTACGTG
* * * *
6696 AGAATTGGTTCTCTCTTAT-TTCTTGGACAAACTTTCAAACTTGTCAAACTTTTATGAGTTCTTT
1 AGAATTGTTTCTCTCTT-TGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
** * * *
6760 TATAACTTCTGGTT-CTTAAAGTATTCAAGAC-ATTTTATGTTCCATCGAGAAATTTTTCGAGCA
65 TATAACTTC-GGTTCCTTAAAGTATTCAAGACGA-TCCA--TTCCTTCGAGCAATTTTTCGAACA
* * * * * *
6823 ATCCAAGCTCGTGGAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGT
126 TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * *
6888 CTATGAATTAAAATCTTATTAACCTT
191 CTTTGAATTAAAAACTTATTTACGTG
* * *
6914 AGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * *
6979 ATAGCTTTTTGGTTCCTTAATGTATTCATGACGATCCAATCCTTCGTGCAACTTTCCG-A-A--C
66 ATAAC--TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * *
7040 CATGCT-TAGGAAATCGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCT
129 CATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* *
7104 TTGGATTAAAAAC-------CCTG
193 TTGAATTAAAAACTTATTTACGTG
* * * * * **
7121 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGCACTTGTTAAACTTGTAAAAAAGTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTT-T-TACGAG---T
* ** * * * ** *** *
7185 AGTCTTTGAATTAAAAACTT-ATTTACATGTGAATTGT-TTC---TCTCTTGGTT-CTTGGATG-
60 --TC-TT---TT-ATAACTTCGGTT-CCT-T-AA-AGTATTCAAGACGATCCATTCCTTCGA-GC
* * * ** ** * * * *
7243 AAATTCT-GAAC-TTGTCAAACTTTAAGGAGATC-TATTATAACTTCGCTTCCTTAAAGTA-TTA
113 AATTTTTCGAACATT-CCATGC-TCGA-GAAATCGCATCAT---TT-G-GT-C-TAAA-TAGTT-
* * * ** * *
7304 AATCAATCCATTCCTTCG--AGCAATTTTTCGAACATTCCATG-CTTGAGAAATCACATCATTT-
166 --T--GT-CATT--TT-GTAAACAAGTTTT-GGTC-TT---TGAATT-A-AAA--AC-TTATTTA
* *
7365 GGTCT
213 CGT-G
* * * ** * * ** *
7370 A-AATAGTTTGTAAT-TTTG----TAAAC-AAGTTTTGGTCTATGAATTAAAAACTTATTTACAA
1 AGAATTGTTTCT-CTCTTTGTTCTTGGACGAACTTTCGAACT-TG---T-CAAAC-T-TTTAC--
* * * * ** * * * * ** **
7428 GAGAATTGTTTCTCT--CTT-TGTTCATGGACGAACTTC-CGAAC-TTCTCA-AACTTTTA-CTA
56 GAG--TTCTTT-TATAACTTCGGTTCCTTAAAGTA-TTCAAG-ACGATC-CATTCCTTCGAGC-A
* ** * * * * * *** * *
7486 GTTCTTTTATAAC-TTCGGATCCTTAAAGTATTCAAAACG-ATCATTCCTTCGAGCAAT-TTTTC
114 -AT-TTTTCGAACATTC-CATGC-T--CG-A--GAAATCGCATCATTTGGTCTA--AATAGTTT-
* * **** * * * * * * *
7548 GAACATTCCATGCTTGGGAA--ATTGCATCATTTG-GTCTAAATAGTTCGTCATTT-TGTAA
167 G-TCATT--TTG-TAAACAAGTTTTG-GTC-TTTGAAT-TAAA-A--AC-TTATTTACGT-G
* * *** * * * ***
7606 ACAAGTTTTGGTTTTTGAATTAAAATCTTATTAAGCTGA-GAATTATTTCTCTCTTGGTTCATGG
1 AGAA---TT-GTTTCTCTCTT----TGTTCTT--G--GACGAA--CTTTCGAACTT-G-TCA---
* ** * * * * *
7670 ATGAGCTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAGCTTTTTGGTTCCTTAATGTATT
47 A--A-CTTT--TACGAGT---TCTTTTA-TA--AC--TT--C-------GGTTCCTTAAAGTATT
* * * * * * * *
7735 CAAGACGATCCAATCCTTCGCA-CAA-CTTTCCAA-A--CCATGCTTGGGAAATCACATCCTATG
90 CAAGACGATCCATTCCTTCG-AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * * **
7795 GTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTCCCCG
154 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * * *
7858 AGAATTGTTTCTCT-TATGGTTCATGGACGAACTTTTGCACTTGTTAAACTTGTACGAGTTCTTA
1 AGAATTGTTTCTCTCT-TTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * **
7922 TATAAATTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTTGAGCAATTTTTTTAACATTC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTC
* * * *** * * * *
7987 CACGTTCTAGAAATCATGTCATTTAGTGTAAACAGTTTGTCATTTCGTAAACAAGTTTTGGTCTT
129 CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
8052 TGAATTAAAAACTTATTTACGTG
194 TGAATTAAAAACTTATTTACGTG
* * * * * *
8075 AGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTTGAACTCGTCAAACTTTTACAAGTTCTTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** * ** *
8140 ATAACTTCTGTTGCTTAAAGTATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA--TTCCTTCGAGCAATTTTTCGAACATTC
* * * *
8205 CATGCTCGGGGAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTT
129 CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
8270 TGAATCAAAATCTTATTAACTTG
194 TGAATTAAAAACTTATTTACGTG
* * * * **
8293 AGAATTGTTTCTCTCTTAGTTCATGGATGAACTTTCGAACTTCTCAAACTTTTACGAGTTCAGTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * *
8358 ATAGCTTTTCGGTTCCTTAACGTATTCAAGGCGATCCATTCCTTCGCGTAACTTTCCGAAC---C
66 ATAAC--TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * * *
8420 ACA--CTCTG-GAAATTGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTTGTC
129 -CATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
8482 TTTGAATTAGAAACTTATTTACGTG
192 TTTGAATTAAAAACTTATTTACGTG
* * *
8507 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAGACTTTTACGAGTTATTGT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
8572 ATAACTTCGGTTCCTTAAAGTATTTAAGAAGATCCATTCCTTCAAGCAATGTCTCGAACATTCTA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * *
8637 TGCTCGAGTAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTCTTTG
131 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* *
8702 AATTATAAACTTTTTTACGTG
196 AATTAAAAACTTATTTACGTG
* * * * **
8723 AGAATTG-TTC-CTCTTAGTTCTTGGACCAACTTCCGAACTTGTCAAACTTTTACTAGTAATTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** *
8786 TTAACTTCGGTTTCATAAAGTATTCAAGAAAATCCATTCAC-ACGAGCAATTTTTCGAACATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC-CTTCGAGCAATTTTTCGAACATTCC
* ** *
8850 ATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTCATCATTTTGTAAACAAGTTTTAGTCTT
130 ATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
8914 TGAATTTAAAAACTTATTTACGTG
194 TGAA-TTAAAAACTTATTTACGTG
* * * * *
8938 AGAATTATTTCTCTC-CTGTTTATTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTT
1 AGAATTGTTTCTCTCTTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
** * * * * ** *
9002 TATAACTTTTGTTGCTTAAAGTATTCAAGATGATCTATGTTCCATCGA-CTAATTTTT-GAGTAG
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA--TTCCTTCGAGC-AATTTTTCGAACAT
* * * * *
9065 TCCATGCTCGCGGAATCACATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTC
127 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * *
9130 TTTAAATTAAAAACATATTTACATG
192 TTTGAATTAAAAACTTATTTACGTG
* * *
9155 AGAATTGTTTCTCTCTTTGTTCTTGGACGAAC-ATCTGAACTTGTCAAACTTCTACTAGTTCTTT
1 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * *
9219 TATAACTTCGGATCCTTAAATTATTTAAAACAATCCATTCCTTCAAGCAATTTTCCGAACATTCC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCC
9284 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
130 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
9325 AACTTTTTGA
Statistics
Matches: 5188, Mismatches: 979, Indels: 631
0.76 0.14 0.09
Matches are distributed among these distances:
202 150 0.03
203 59 0.01
204 126 0.02
205 69 0.01
206 108 0.02
207 146 0.03
208 5 0.00
209 5 0.00
210 46 0.01
211 5 0.00
212 126 0.02
213 29 0.01
214 610 0.12
215 626 0.12
216 1335 0.26
217 706 0.14
218 414 0.08
219 36 0.01
220 53 0.01
221 4 0.00
222 3 0.00
223 3 0.00
224 2 0.00
225 2 0.00
226 14 0.00
227 2 0.00
229 42 0.01
230 138 0.03
231 7 0.00
232 5 0.00
233 8 0.00
234 5 0.00
235 5 0.00
236 15 0.00
237 8 0.00
238 7 0.00
239 27 0.01
240 7 0.00
241 21 0.00
242 8 0.00
243 10 0.00
244 17 0.00
245 10 0.00
246 3 0.00
247 3 0.00
248 24 0.00
249 15 0.00
250 3 0.00
252 9 0.00
253 6 0.00
254 2 0.00
255 9 0.00
256 14 0.00
257 10 0.00
258 6 0.00
259 4 0.00
260 4 0.00
261 8 0.00
262 7 0.00
263 2 0.00
264 1 0.00
266 1 0.00
267 3 0.00
268 1 0.00
270 5 0.00
272 7 0.00
273 15 0.00
274 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
AATTAAAAACTTATTTACGTG
Found at i:5824 original size:418 final size:420
Alignment explanation
Indices: 4785--7114 Score: 2509
Period size: 418 Copynumber: 5.5 Consensus size: 420
4775 ATTTAGTCTA
** * * * * *
4785 AATTGTTTCTCTCTTTATTGTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTATTAT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
* * * * * *
4850 AACTTC-TGTTCCTTAAAGTATTCAAGACGATCCATTCCGTTGAGCAATTTTTCGATCATTCTAC
66 AACTTCGT-TTCCTTAAAGTATTCAAGAAGATCCATTCC-TAGAGCAATCTTTCGAACATTCCAT
* *
4914 GCTCGAGAAATTGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGGTTTGGTCTTTGA
129 GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* *
4978 ATTATAAACTTTTTTACGTGAGAATTGTTTA-TCTCTTTGTTCTTGCACGAACTTCCGAACTTG-
194 ATTA-AAACTTATTTACGTGAGAATTG-TTACTCTCTTTGTTCTTGCACGAACTTCCAAACTTGT
* * * *
5041 CAAAACTTTTACGAGTTATTTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCAA
257 C-AAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGAAGATCCATT--C--
* * * *
5106 GAGCAATTTTTCGAACATTTCATGCTC-AAGAAATAGCATCATTTGGTCT-AATAGTTTGTCATT
317 -A-C----TTTCGAGCATTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
5169 TTGTAATCAAGTTTTGTTCTTTGAATTAAAAACTTATTTACATGAG
375 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
* * *
5215 AATTGTTTCTCTCTTTCTTCATGGACGAACTTTCCAACTTGTCAAACTTTTA-AGATTTA-TTTT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACA-AGTTATTTTT
* * * *
5278 TAACTTCAG-TTCCTTAAAGTATTCAACAGGATCCATTCATTAGAGCAAT-TTTCTGAACATTTC
65 TAACTTC-GTTTCCTTAAAGTATTCAAGAAGATCCATTC-CTAGAGCAATCTTTC-GAACATTCC
* * *
5341 TTACTCGAGAAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
127 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* ** *
5406 GAATTAAGAACTTATTTACGTGAGAATTGTTACTCTCTTTGTGCTTTTACGAACTTCCCAACTTG
192 GAATTAA-AACTTATTTACGTGAGAATTGTTACTCTCTTTGTTCTTGCACGAACTTCCAAACTTG
*
5471 TCAAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATCCATTC-CTT
256 TCAAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGAAGATCCATTCACTT
* *
5535 T-GAGCATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAG
321 TCGAGCATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
5599 TTTTGGTCTTTGAATTATAAACTTCTTTACGTGAG
386 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
* *
5634 AATT-TTT-TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
* * * *
5697 AACTTCGTTTCCTTAAAGTATTCATGAATATCCATTCCCACGAGTAATCTTTCGAACATTCCATG
66 AACTTCGTTTCCTTAAAGTATTCAAGAAGATCCATTCCTA-GAGCAATCTTTCGAACATTCCATG
* * *
5762 CTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAA
130 CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
5827 TTATAAACTTTTTTACATGAGAATTGATTA-TCTCTTTGTTCTTGCACGAACTTCCGAACTTG-C
195 TTA-AAACTTATTTACGTGAGAATTG-TTACTCTCTTTGTTCTTGCACGAACTTCCAAACTTGTC
** * * * * *
5890 GAAACTTTTACGGGTTATTTTTTTAACTTCGGTTCCTTAAACTATTCAAGAAGATCCTTTCCTAA
258 -AAACTTTTACTAGTT-CTTTTATAACTTCGGATCCTTAAAGTATTCAAGAAGATCCATT-C---
* * * *
5955 GAGCAATTTTTCGAACATTTCATGCTC-AAGAAATAGCATCATTTGGTCT-AATAGTTTGTCATT
317 -A-C----TTTCGAGCATTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
6018 TTGTAATCAAGTTTTGTTCTTTGAATTAAAAACTTATTTACATGAG
375 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
* *
6064 AATTGTTTCTCTCTTTCTTCATGGACGAACTTTCGAACTTGTCAAACTTTTA-AGATTTATTTTT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACA-AGTTATTTTT
* * * * * * *
6128 TAACTTCGGTTCCTTAAAGTATTCAACAGGATCCATTCCTTAGAGTAATTTTTCGAACATTTCTT
65 TAACTTCGTTTCCTTAAAGTATTCAAGAAGATCCATTCC-TAGAGCAATCTTTCGAACATTCCAT
* * * *
6193 ACTCGAGAAATCGCATCATTTGGTCTAAATAGTTAGTCATTTTGTAAACAAGTTTTGCTCTTTTA
129 GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * *
6258 ATTAAGAACTTA-TAACGTGAGAATTGTTTCTCTCTTTGTTC-TCCTATGAACTTCCAAACTTGT
194 ATTAA-AACTTATTTACGTGAGAATTGTTACTCTCTTTGTTCTTGC-ACGAACTTCCAAACTTGT
*
6321 CAAACTTTTACTAGTTC-TTTATAACTTCGGATCCTTAAAGTATTCAAGATGATCCATTC-C-TT
257 CAAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGAAGATCCATTCACTTT
* * *
6383 CGAGCATTCCATGCTCGGGAATTCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
322 CGAGCATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * *
6448 TTTGGTCTTTGAATTATAAACTTCTTTACGTGAG
387 TTTGGTCTTTGAATTAAAAACTTATTTACATGAG
* * **
6482 AATTTTTTCTCTCTTTATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTATTTTTT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
* * * * *
6547 AACTTCGTTTCCTTAAAGTATTCACGAATATCCATTCCCATGAGTAACCTTTCGAACATTCCATG
66 AACTTCGTTTCCTTAAAGTATTCAAGAAGATCCATTCCTA-GAGCAATCTTTCGAACATTCCATG
* * * *
6612 CTCGGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAA
130 CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
6677 TTAAAAACTTATTTACGTGAGAATTGGTT-CTCTCTTAT-TTCTTGGACAAACTTTCAAACTTGT
195 TT-AAAACTTATTTACGTGAGAATT-GTTACTCTCTT-TGTTCTTGCACGAACTTCCAAACTTGT
* *
6740 CAAACTTTTA-TGAGTTCTTTTATAACTTCTGG-TTCTTAAAGTATTCAAGACATTTTATGTTCC
257 CAAACTTTTACT-AGTTCTTTTATAACTTC-GGATCCTTAAAGTATTCAAG--A----A-GATCC
* * * * *
6803 A-TCGAGAAATTTTTCGAGCAATCCAAGCTCGTG-GAATCGCATCATTTGGTCTAAACAGTTTGT
313 ATTC-----A-CTTTCGAGCATTCCATGCTCG-GAAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * * *
6866 CAATTTGTAAACAAGTTTTGGTCTATGAATTAAAATCTTATTAACCTTAG
371 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
** * * * *
6916 AATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
* * * * * * * * *
6981 AGCTTTTTGGTTCCTTAATGTATTCATGACGATCCAATCCTTCGTGCAA-CTTTCCG-A-A--CC
66 AAC--TTCGTTTCCTTAAAGTATTCAAGAAGATCCATTCC-TAGAGCAATCTTT-CGAACATTCC
* * * *
7041 ATGCT-TAGGAAATCGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTT
127 ATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
*
7105 TGGATTAAAA
191 TGAATTAAAA
7115 ACCCTGAGAA
Statistics
Matches: 1617, Mismatches: 209, Indels: 147
0.82 0.11 0.07
Matches are distributed among these distances:
417 80 0.05
418 442 0.27
419 161 0.10
420 33 0.02
421 2 0.00
422 2 0.00
423 1 0.00
426 3 0.00
427 5 0.00
428 6 0.00
429 122 0.08
430 249 0.15
431 91 0.06
432 234 0.14
433 1 0.00
434 145 0.09
435 6 0.00
436 34 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (420 bp):
AATTGTTTCTCTCTTTATTCATGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTT
AACTTCGTTTCCTTAAAGTATTCAAGAAGATCCATTCCTAGAGCAATCTTTCGAACATTCCATGC
TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
TAAAACTTATTTACGTGAGAATTGTTACTCTCTTTGTTCTTGCACGAACTTCCAAACTTGTCAAA
CTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGAAGATCCATTCACTTTCGAG
CATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
GTCTTTGAATTAAAAACTTATTTACATGAG
Found at i:7804 original size:214 final size:215
Alignment explanation
Indices: 7170--9324 Score: 2281
Period size: 214 Copynumber: 10.0 Consensus size: 215
7160 CTTGTTAAAC
* * * *
7170 TTGTAAAAAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGTGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * * * *
7235 CTTGGATGAA-ATTCTGAACTTGTCAAACTTTAAGGAGATCTATTATAACTTCGCTTCCTTAAAG
66 CATGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * *
7299 TATT-AA-ATCAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGAGAAATCACATCA
130 TATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCA
*
7362 TTTGGTCTAAATAGTTTGTAATT
193 TTTGGTCTAAATAGTTTGTCATT
* ** *
7385 TTGTAAACAAGTTTTGGTCTATGAATTAAAAACTTATTTACAAGAGAATTGTTTCTCTCTTTGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * *
7450 CATGGACGAACTTCCGAACTTCTCAAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGT
66 CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* *
7515 ATTCAAAACGAT-CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATTGCATCATT
131 ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCATT
*
7579 TGGTCTAAATAGTTCGTCATT
195 TGGTCTAAATAGTTTGTCATT
* * * *
7600 TTGTAAACAAGTTTTGGTTTTTGAATTAAAATCTTA-TTAAGCTGAGAATTATTTCTCTCTTGGT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAATTGTTTCTCTCTTGGT
* * *
7664 TCATGGATGAGCTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA-AAGCTTTTTGGTTCCTTA
65 TCATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-C--TTCGGTTCCTTA
* * * * *
7728 ATGTATTCAAGACGATCCAATCCTTCGCA-CAA-CTTTCCAA-A-CCATGCTTGGGAAATCACAT
127 AAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTTCGAACATCCATGCTTGGGAAATCGCAT
* *
7789 CCTATGGTCTAAATAGTTTGTCATT
191 CATTTGGTCTAAATAGTTTGTCATT
* * * **
7814 TTGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTCCCCGAGAATTGTTTCTCT-TATGGT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGT
* * * * * * *
7878 TCATGGACGAACTTTTGCACTTGTTAAACTTGTACGAGTTCTTATATAAATTTGGTTCCTTAAAG
65 TCATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * ** * ** ***
7943 TATTCAAGACGATTCATTCCTTTTGAGCAATTTTTTTAACATTCCACG-TTCTAGAAATCATGTC
130 TATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACA-TCCATGCTT-GGGAAATCGCATC
* * *
8007 ATTTAGTGTAAACAGTTTGTCATT
192 ATTTGGTCTAAATAGTTTGTCATT
*
8031 TCGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * *
8096 CATGGATGAACTTTTGAACTCGTCAAACTTTTACAAGTTCTTTTATAACTTCTGTTGCTTAAAGT
66 CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* ** * ** * *
8161 ATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTCCATGCTCGGGGAATCGCATCA
131 ATTCAAGACGATCCA--TTCCTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCA
* *
8226 TTTGGTCTAAACAGTTTGTCAAT
193 TTTGGTCTAAATAGTTTGTCATT
* * * * *
8249 TTGTAAACAAGTTTTGGTCTTTGAATCAAAATCTTATTAACTTGAGAATTGTTTCTCTCTTAGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * ** * *
8314 CATGGATGAACTTTCGAACTTCTCAAACTTTTACGAGTTCAGTTATAGCTTTTCGGTTCCTTAAC
66 CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC--TTCGGTTCCTTAAA
* * * * * *
8379 GTATTCAAGGCGATCCATTCCTTCGCGTAACTTTCCGAAC--CACA--CTCT-GGAAATTGCATC
129 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATC-CATGCT-TGGGAAATCGCATC
* *
8439 CTATGGTCTAAATAGTTTGTCATT
192 ATTTGGTCTAAATAGTTTGTCATT
* * * *
8463 TTGCAAACAAGTTTTTGTCTTTGAATTAGAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * *
8528 CTTGGACGAACTTTCGAACTTGTCAGACTTTTACGAGTTATTGTATAACTTCGGTTCCTTAAAGT
66 CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* * * * * * * * *
8593 ATTTAAGAAGATCCATTCCTTCAAGCAATGTCTCGAACATTCTATGCTCGAGTAATCGCATCATT
131 ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCATT
*
8658 TGTTCTAAATAGTTTGTCATT
195 TGGTCTAAATAGTTTGTCATT
* * * *
8679 TTGTAAATAAGTTTTGGTCTTTGAATTATAAACTTTTTTACGTGAGAATTG-TTC-CTCTTAGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * ** * * *
8742 CTTGGACCAACTTCCGAACTTGTCAAACTTTTACTAGTAATTTTTTAACTTCGGTTTCATAAAGT
66 CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
** * *
8807 ATTCAAGAAAATCCATTCAC-ACGAGCAATTTTTCGAACATTCCATGCTTAGGAAATCGCATCAT
131 ATTCAAGACGATCCATTC-CTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCAT
**
8871 TTGGTCTAAATAGTTCATCATT
194 TTGGTCTAAATAGTTTGTCATT
* * *
8893 TTGTAAACAAGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAATTATTTCTCTCCT-GT
1 TTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * ** *
8957 TTATTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTTTGTTGCTTAAA
65 TCA-TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * ** * *
9022 GTATTCAAGATGATCTATGTTCCATCGA-CTAATTTTT-GAGTAGTCCATGCTCGCGG-AATCAC
129 GTATTCAAGACGATCCA--TTCCTTCGAGC-AATTTTTCGAACA-TCCATGCTTG-GGAAATCGC
* *
9084 ATCATTTGGTCTAAACAGTTTGTCAAT
189 ATCATTTGGTCTAAATAGTTTGTCATT
* * * *
9111 TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACATATTTACATGAGAATTGTTTCTCTCTTTGTT
1 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * *
9176 CTTGGACGAAC-ATCTGAACTTGTCAAACTTCTACTAGTTCTTTTATAACTTCGGATCCTTAAAT
66 CATGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * * * * *
9240 TATTTAAAACAATCCATTCCTTCAAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCAT
130 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA-TCCATGCTTGGGAAATCGCATCAT
9305 TTGGTCTAAATAGTTTGTCA
194 TTGGTCTAAATAGTTTGTCA
9325 AACTTTTTGA
Statistics
Matches: 1608, Mismatches: 284, Indels: 95
0.81 0.14 0.05
Matches are distributed among these distances:
212 76 0.05
213 7 0.00
214 426 0.26
215 322 0.20
216 141 0.09
217 347 0.22
218 244 0.15
219 21 0.01
220 24 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CATGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATCCATGCTTGGGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATT
Found at i:8925 original size:863 final size:860
Alignment explanation
Indices: 7170--9324 Score: 2565
Period size: 863 Copynumber: 2.5 Consensus size: 860
7160 CTTGTTAAAC
* * *
7170 TTGTAAAAAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGTGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * ** * * *
7235 CTTGGATGAAATTCTGAACTTGTCAAACTTTAAGGAGATCTATTATAACTTC-GCTTCCTTAAAG
66 CATGGATGAACTTTTGAACTTGTCAAACTTTAACAAGTTCTTTTATAACTTCTG-TTGCTTAAAG
* *** * ** * * *
7299 TATT-AA-ATCA-ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGAGAAATCACATC
130 TATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTCCATGCTCGAGGAATCACATC
* *
7361 ATTTGGTCTAAATAGTTTGT-AATTTTGTAAACAAGTTTTGGTCTATGAATTAAAAACTTATTTA
195 ATTTGGTCTAAACAGTTTGTCAA-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* *
7425 CAAGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTCCGAACTTCTCAAACTTTTACTAGTTC
259 CATGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCGAACTTCTCAAACTTTTACTAGTTC
** * *
7490 TTTTATAACTTCGGATCCTTAAAGTATTCAAAACGATCATTCCTTCGAGCAATTTTTCGAACATT
324 AGTTATAACTTCGGATCCTTAAAGTATTCAAAACGATCATTCCTTCGAGCAACTTTCCGAACA-T
* * *
7555 CCATGCTTGGGAAATTGCATCATTTGGTCTAAATAGTTCGTCATTTTGTAAACAAGTTTTGGTTT
388 CCATGCTTGGGAAATTGCATCATATGGTCTAAATAGTTCGTCATTTTGCAAACAAGTTTTGGTCT
* *
7620 TTGAATTAAAATCTTATTAAGCTGAGAATTATTTCTCTCTTGGTTCATGGATGAGCTTTCGAACT
453 TTGAATTAAAATCTTATTAAGCTGAGAATTATTTCTCTCTTGGTTCATGGACGAACTTTCGAACT
* * * * *
7685 TGTCAAACTTTTACGAGTTCTTTTAAAGCTTTTTGGTTCCTTAATGTATTCAAGACGATCCAATC
518 TGTCAAACTTTTACGAGTTATTGTAAAGC-TTTCGGTTCCTTAAAGTATTCAAGAAGATCCAATC
* * * *
7750 CTTCGCACAACTTTCCAAACCATGCTTGGGAAATCACATCCTATGGTCTAAATAGTTTGTCATTT
582 CTTCGAACAACTTTCCAAACCATGCTCGAGAAATCACATCATATGGTCTAAATAGTTTGTCATTT
* * *
7815 TGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTCCCCGAGAATTGTTTCTCTTATGGTTC
647 TGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACCCGAGAATTGTTCCTCTTA-GGTTC
* ** * * ** * *
7880 ATGGACGAACTTTTGCACTTGTTAAACTTGTACGAGTTCTTATATAAATTTGGTTCCTTAAAGTA
711 ATGGACCAACTTCCGAACTTGTCAAACTTGTACGAGTAATTATATAAATTCGGTTCCATAAAGTA
** * ** ** * **
7945 TTCAAGACGATTCATTCCTTTTGAGCAATTTTTTTAACATTCCACGTTCTAGAAATCATGTCATT
776 TTCAAGAAAATCCATTCC-TACGAGCAATTTTTCGAACATTCCACGCTCTAGAAATCACATCATT
* **
8010 TAGTGTAAACAGTTTGTCATT
840 TAGTCTAAACAGTTCATCATT
* *
8031 TCGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* *
8096 CATGGATGAACTTTTGAACTCGTCAAACTTTTACAAGTTCTTTTATAACTTCTGTTGCTTAAAGT
66 CATGGATGAACTTTTGAACTTGTCAAACTTTAACAAGTTCTTTTATAACTTCTGTTGCTTAAAGT
* *
8161 ATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTCCATGCTCGGGGAATCGCATCA
131 ATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTCCATGCTCGAGGAATCACATCA
* * * *
8226 TTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATCAAAATCTTATTAACT
196 TTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACA
* * *
8291 TGAGAATTGTTTCTCTCTTAGTTCATGGATGAACTTTCGAACTTCTCAAACTTTTACGAGTTCAG
261 TGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCGAACTTCTCAAACTTTTACTAGTTCAG
* * * ** * *
8356 TTATAGCTTTTCGGTTCCTTAACGTATTCAAGGCGATCCATTCCTTCGCGTAACTTTCCGAAC--
326 TTATAAC--TTCGGATCCTTAAAGTATTCAAAACGAT-CATTCCTTCGAGCAACTTTCCGAACAT
* * *
8419 CACA--CTCT-GGAAATTGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTTGT
388 C-CATGCT-TGGGAAATTGCATCATATGGTCTAAATAGTTCGTCATTTTGCAAACAAGTTTTGGT
* * * *
8481 CTTTGAATTAGAAA-CTTATTTA-CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCG
451 CTTTGAATTA-AAATCTTATTAAGC-TGAGAATTATTTCTCTCTTGGTTCATGGACGAACTTTCG
* *
8544 AACTTGTCAGACTTTTACGAGTTATTGTATAA-C-TTCGGTTCCTTAAAGTATTTAAGAAGATCC
514 AACTTGTCAAACTTTTACGAGTTATTGTA-AAGCTTTCGGTTCCTTAAAGTATTCAAGAAGATCC
* * * * * * *
8607 ATTCCTTC-AAGCAA-TGTCTCGAACATTCTATGCTCGAGTAATCGCATCATTTGTTCTAAATAG
578 AATCCTTCGAA-CAACT-T-TCCAA-A--CCATGCTCGAGAAATCACATCATATGGTCTAAATAG
* * * * **
8670 TTTGTCATTTTGTAAATAAGTTTTGGTCTTTGAATTATAAACTTTTTTACGTGAGAATTGTTCCT
637 TTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACCCGAGAATTGTTCCT
* * * * * * *
8735 CTTA-GTTCTTGGACCAACTTCCGAACTTGTCAAACTTTTACTAGTAATTTTTTAACTTCGGTTT
702 CTTAGGTTCATGGACCAACTTCCGAACTTGTCAAACTTGTACGAGTAATTATATAAATTCGGTTC
*
8799 CATAAAGTATTCAAGAAAATCCATTCAC-ACGAGCAATTTTTCGAACATTCCATGCT-TAGGAAA
767 CATAAAGTATTCAAGAAAATCCATTC-CTACGAGCAATTTTTCGAACATTCCACGCTCTA-GAAA
* * *
8862 TCGCATCATTTGGTCTAAATAGTTCATCATT
830 TCACATCATTTAGTCTAAACAGTTCATCATT
* *
8893 TTGTAAACAAGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAATTATTTCTCTCCT-GT
1 TTGTAAACAAGTTTTAGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * *
8957 TTATTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTTTGTTGCTTAAA
65 TCA-TGGATGAACTTTTGAACTTGTCAAACTTTAACAAGTTCTTTTATAACTTCTGTTGCTTAAA
* *
9022 GTATTCAAGATGATCTATGTTCCATCGA-CTAATTTTT-GAGTAGTCCATGCTCGCGGAATCACA
129 GTATTCAAGATGATATATGTTCCATCGAGC-AATTTTTCGAGTAGTCCATGCTCGAGGAATCACA
* *
9085 TCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACATATTT
193 TCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * * *
9150 ACATGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC-ATCTGAACTTGTCAAACTTCTACTAGT
258 ACATGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTTC-GAACTTCTCAAACTTTTACTAGT
** * * * * *
9214 TCTTTTATAACTTCGGATCCTTAAATTATTTAAAACAATCCATTCCTTCAAGCAATTTTCCGAAC
322 TCAGTTATAACTTCGGATCCTTAAAGTATTCAAAACGAT-CATTCCTTCGAGCAACTTTCCGAAC
* * * * *
9279 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
386 A-TCCATGCTTGGGAAATTGCATCATATGGTCTAAATAGTTCGTCA
9325 AACTTTTTGA
Statistics
Matches: 1097, Mismatches: 166, Indels: 59
0.83 0.13 0.04
Matches are distributed among these distances:
860 45 0.04
861 157 0.14
862 232 0.21
863 324 0.30
864 202 0.18
865 92 0.08
866 24 0.02
867 21 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (860 bp):
TTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CATGGATGAACTTTTGAACTTGTCAAACTTTAACAAGTTCTTTTATAACTTCTGTTGCTTAAAGT
ATTCAAGATGATATATGTTCCATCGAGCAATTTTTCGAGTAGTCCATGCTCGAGGAATCACATCA
TTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACA
TGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCGAACTTCTCAAACTTTTACTAGTTCAG
TTATAACTTCGGATCCTTAAAGTATTCAAAACGATCATTCCTTCGAGCAACTTTCCGAACATCCA
TGCTTGGGAAATTGCATCATATGGTCTAAATAGTTCGTCATTTTGCAAACAAGTTTTGGTCTTTG
AATTAAAATCTTATTAAGCTGAGAATTATTTCTCTCTTGGTTCATGGACGAACTTTCGAACTTGT
CAAACTTTTACGAGTTATTGTAAAGCTTTCGGTTCCTTAAAGTATTCAAGAAGATCCAATCCTTC
GAACAACTTTCCAAACCATGCTCGAGAAATCACATCATATGGTCTAAATAGTTTGTCATTTTGCA
AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACCCGAGAATTGTTCCTCTTAGGTTCATGGA
CCAACTTCCGAACTTGTCAAACTTGTACGAGTAATTATATAAATTCGGTTCCATAAAGTATTCAA
GAAAATCCATTCCTACGAGCAATTTTTCGAACATTCCACGCTCTAGAAATCACATCATTTAGTCT
AAACAGTTCATCATT
Found at i:9446 original size:142 final size:141
Alignment explanation
Indices: 9190--9466 Score: 398
Period size: 142 Copynumber: 2.0 Consensus size: 141
9180 GACGAACATC
* * * *
9190 TGAACTTGTCAAACTTCTACTAGTTCTTTTATAACTTCGGATCCTTAAATTATTTAAAACAATCC
1 TGAACTTGTCAAACTTCTACAAGTTATTTTATAACTTCAGATCCTTAAAGTATTTAAAACAATCC
*
9255 ATTCCTTCAAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
66 ATTCC-TCAAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTT
9320 TGTCAAACTTTT
130 TGTCAAACTTTT
* * * *
9332 TGAACTTGTCAAACTT-TACCAAGTTATTTTTTAACTTCAGTTCCTTAAAGTATTCTAGAA-GAT
1 TGAACTTGTCAAACTTCTA-CAAGTTATTTTATAACTTCAGATCCTTAAAGTATT-TAAAACAAT
*
9395 CCATTCC-CATGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATA
64 CCATTCCTCA--AGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATA
9459 GTTTGTCA
127 GTTTGTCA
9467 TTTTGCAATC
Statistics
Matches: 121, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
140 2 0.02
141 2 0.02
142 113 0.93
143 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (141 bp):
TGAACTTGTCAAACTTCTACAAGTTATTTTATAACTTCAGATCCTTAAAGTATTTAAAACAATCC
ATTCCTCAAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTT
GTCAAACTTTT
Found at i:9707 original size:216 final size:217
Alignment explanation
Indices: 9333--10551 Score: 1284
Period size: 216 Copynumber: 5.7 Consensus size: 217
9323 CAAACTTTTT
* * * ** *
9333 GAACTTGTCAAAC-TTTACCAAGTTATTTTTTAACTTCAGTTCCTTAAAGTATTCTAGAAGATCC
1 GAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCC
* *
9397 ATTCCCAT-GAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGT
65 ATTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * *
9461 TTGTCATTTTGCAATCAAGTTTTAGTCTTTGAATTAAAAACTTATGTACGTGAGAATTTTTTCTC
130 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
9526 TCTTTGTTCTTGGACAAACTTTC
195 TCTTGGTTCTTGGACGAACTTTC
* * * * * * * * *
9549 GAACTTGTCAAACTTTTGCGAGTTATTTTTTAACGTCGGTTCCCTAAACTAATCACGAAGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCCA
9614 TTCCCAT-GAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
66 TTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
9678 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCT
131 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
9741 CTTGGTTCATGGATGAACTTTC
196 CTTGGTTCTTGGACGAACTTTC
* *
9763 GAACTTGTCAAACTTTTACGAGTTCGTTTATAA---------C--AAAGTATTCAAG-AGATCTA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCCA
* * * * * * *
9816 TGTTCCATCGAGAAATTTT-TCAAGCAGTCCATGCTCGAGGAATCGCATCTTTTGGTCTAAACAG
66 T-TCCCATCGAGCAATTTTCT-AAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * * * *
9880 TTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTAACCT-AGGAATTGTTTC
129 TTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTC
* * *
9944 TCTCTTGGTTCATGGATGAACATTC
193 TCTCTTGGTTCTTGGACGAACTTTC
* * * * * * *
9969 AAACTAGTCAAAATTTTACGAGTTCTTTTGTAGCTTTTTGGTTCCTTAATGTATTCAAGATGATC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC--TTTGGTTCCTTAAAGTATTCAAGAAGATC
* * * ** ** * * * *
10034 CAAT-CCTTCGCGCAACATTC-CGA-A--CCATGCTCGGGAAATTGCATCCTATGGTCTAAATAG
64 CATTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * * * * * *
10094 TTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTCTTTCCCTAAGAATTGTTTCT
129 TTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
10159 CTCTTGGTTCTTGGACGAAC-TTC
194 CTCTTGGTTCTTGGACGAACTTTC
* * * * * * * *
10182 CACACTTGTTAAACTTCTATGAGTTCTTATATAAATTTGGTTCCTTAAAGTATTCAAGATGATTC
1 GA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCC
** * * * *
10247 ATTCCTTTCGAGCAATTTTTTAAACATTCCACGTTCGAGAAATCGCATCATTTGTTCTAAATAGT
65 ATTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * *
10312 TTGTCATTTTGTAAAAAAGTTTTAGTCTTCGAATTAAAAACTTATTTACGTGCGAATTGTCTCTC
130 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
10377 TCTTGGTTCTTGGACTAACTTCC
195 TCTTGGTTCTTGGACGAACTTTC
* * * * *
10400 AAACTTGTCAAACTTTTACGAGTTCTTCTATAACTTTGATTCCTTAAAGTATTCATGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCCA
* * * * * *
10465 TT-CCATCGAGCAATTTTCTGAACTTTTCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTT
66 TTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * *
10529 AGTCATTTTCTAAATAAGTTTTA
131 TGTCATTTTGTAAACAAGTTTTA
10552 CAAACTTGTC
Statistics
Matches: 835, Mismatches: 138, Indels: 60
0.81 0.13 0.06
Matches are distributed among these distances:
202 7 0.01
203 16 0.02
204 100 0.12
205 3 0.00
206 51 0.06
212 30 0.04
213 15 0.02
214 178 0.21
215 4 0.00
216 239 0.29
217 162 0.19
218 13 0.02
219 12 0.01
220 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (217 bp):
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCCA
TTCCCATCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
CTTGGTTCTTGGACGAACTTTC
Found at i:11017 original size:217 final size:214
Alignment explanation
Indices: 10554--11239 Score: 830
Period size: 217 Copynumber: 3.2 Consensus size: 214
10544 AAGTTTTACA
* * * * *
10554 AACTTGTCAAACTTTTACGAGTACTTTTATAACTTAT-GTTGCTTAAAGAATTCAAGATGATCTA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGATCCTTAAAGAATTCAAGACGATCCA
* * * * *
10618 TGTTCCATTGAGCAA-TTTT-AGAGCAGTCCATGCTC-TGAGAATCGCATTATTTGGTCTAAACA
65 --TTCC-TTCAGCAATTTTTCA-AACATTCCATGCTCGGGA-AATCGCATCATTTGGTCTAAACA
* *
10680 GTTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAAAATTATATT--GTGAGAATTGTTT
125 GTTTGTC-ATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAATTGTTT
*
10743 CTCTCTTTGTTCTTGGACAAAC-TTCTG
188 CTCTCTTTGTTCTTGGACGAACTTTC-G
* * *
10770 AACTTGTCAAACTTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGCATTCAAGACGAACCA
1 AACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTTGGATCCTTAAAGAATTCAAGACGATCCA
* *
10835 TTCCTTCATGCAATTTTTCAAACATTCTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
65 TTCCTTCA-GCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAACAGTTT
*
10900 GTCATTTCGTAAACAAGTTTTGGTCTTTAGAATTAAAAACCTATTTACGTGAGAATTGTTTCTCT
129 GTCATTT-GTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
10965 CTTTGTTCTTGGACGAGCTTTCG
192 CTTTGTTCTTGGACGAACTTTCG
* * * *
10988 AACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGAGGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGATCCTTAAAGAATTCAAGACGATCCAT
* * * *
11053 TCCTTCGAGCAATTTTTCAAAAATTCCATTCTTGGGAAATCGCATCATTTGGTCTAAACAGTTCG
66 TCCTTC-AGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAACAGTTTG
* * * *
11118 TCATTTTGTAAACACGTTTTGGTCTTTGAA-TAAAAATCTTATTAACTTGAGAATTGTTTCTCCC
130 TCA-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTC
* * * *
11182 TTGGTTCATGGATGAACTTTCA
193 TTTGTTCTTGGACGAACTTTCG
* *
11204 AACTTGTCAAACTTTTACGAGTTCCTTTATAGCTTT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT
11240 TTGGTTCCT
Statistics
Matches: 411, Mismatches: 45, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
214 3 0.01
215 18 0.04
216 152 0.37
217 185 0.45
218 50 0.12
219 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGATCCTTAAAGAATTCAAGACGATCCAT
TCCTTCAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAACAGTTTGT
CATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTT
GTTCTTGGACGAACTTTCG
Done.