Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002523.1 Kokia drynarioides strain JFW-HI SEQ_114692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14325
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:2853 original size:63 final size:63

Alignment explanation


    Indices: 2781--2908  Score: 220
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       2771 TTTCTACCAT

                      *                                 *                  
       2781 AGTTTTGCTATGCTCTTCAAGAGACAAATTATCCATTTTTTCTTGTACCACAATATCAGTGCC
          1 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC

                                                           * *             
       2844 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTAGCTCAATATCAGTGCC
          1 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC

              
       2907 AG
          1 AG

       2909 CAGACAGACC


Statistics
Matches: 61,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  63   61  1.00

ACGTcount: A:0.27, C:0.23, G:0.13, T:0.38


Consensus pattern (63 bp):   
AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC

Found at i:8464 original size:32 final size:33

Alignment explanation


    Indices: 8403--8470  Score: 111
    Period size: 35  Copynumber: 2.0  Consensus size: 33

       8393 ACAAGATTAC

                                               
       8403 AATATCAATCTAATCTTAAGATATGATTCTCCCTT
          1 AATATCAATCTAATCTT-A-ATATGATTCTCCCTT

                                             
       8438 AATATCAATCTAATCTT-ATATGATTCTCCCTT
          1 AATATCAATCTAATCTTAATATGATTCTCCCTT

             
       8470 A
          1 A

       8471 TCTTCTAAGA


Statistics
Matches: 33,  Mismatches: 0, Indels: 3
        0.92            0.00        0.08

Matches are distributed among these distances:
  32   16  0.48
  35   17  0.52

ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41


Consensus pattern (33 bp):   
AATATCAATCTAATCTTAATATGATTCTCCCTT
Done.