genome.fa.s2528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002528.1 Kokia drynarioides strain JFW-HI SEQ_114697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23556

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--101	3	28.0	3	87	4	120	63	1	3	32	1.19
1193--1255	29	2.1	29	85	2	81	39	19	1	39	1.61
1191--1345	30	5.1	30	78	5	134	36	20	1	40	1.64
1209--1481	30	9.2	31	71	15	152	34	21	3	41	1.69
1221--1356	61	2.3	61	82	6	163	33	19	2	44	1.63
1247--1686	58	7.5	58	74	10	240	32	23	4	39	1.74
1343--1628	60	4.8	60	77	6	217	33	23	3	39	1.73
1367--1583	29	7.4	29	65	14	86	34	25	3	36	1.74
1665--1754	28	3.2	28	91	0	144	31	27	11	30	1.91
13318--13638	49	6.3	49	69	9	180	38	19	26	15	1.91
13318--13541	98	2.3	99	88	3	326	38	19	25	16	1.92
13520--13632	57	2.0	57	84	3	147	38	21	26	13	1.90
14298--14372	17	4.4	17	84	0	105	44	4	0	52	1.20
14963--15043	3	26.0	3	86	5	108	62	1	3	32	1.20
15890--16010	30	4.0	30	82	7	147	38	21	1	38	1.63
15902--16032	60	2.2	60	83	8	160	37	22	0	39	1.60
15902--16031	30	4.4	28	80	12	109	37	21	0	40	1.59
15948--16408	59	7.8	58	75	9	321	33	25	3	37	1.74
16072--16161	28	3.2	28	73	21	89	38	23	3	34	1.71
16005--16171	29	5.7	27	68	24	83	34	23	3	37	1.73
15944--16290	30	11.8	29	68	18	139	34	25	3	37	1.72
16043--16399	119	3.0	119	76	9	304	32	26	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19692--19743	21	2.5	22	84	9	72	26	1	1	69	1.10

Tables:   1

The End!