Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002533.1 Kokia drynarioides strain JFW-HI SEQ_114712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4335
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33


Found at i:211 original size:41 final size:41

Alignment explanation


    Indices: 150--297  Score: 197
    Period size: 41  Copynumber: 3.6  Consensus size: 41

        140 TAAACGCCGC

                  *        *        **               
        150 TTAGCGGCGTTTTCTAATAAACGCTTCTAATGCTCTGACAT
          1 TTAGCGACGTTTTCTCATAAACGCCACTAATGCTCTGACAT

                  *                                * 
        191 TTAGCGGCGTTTTCTCATAAACGCCACTAATGCTCTGACTT
          1 TTAGCGACGTTTTCTCATAAACGCCACTAATGCTCTGACAT

               *                              *   *  
        232 TTAACGACGTTTTCTCATAAACGCCACTAATGCTTTGATAT
          1 TTAGCGACGTTTTCTCATAAACGCCACTAATGCTCTGACAT

                            *        
        273 TTAGCGACGTTTTTCTTATAAACGC
          1 TTAGCGACG-TTTTCTCATAAACGC

        298 TGATATTGTT


Statistics
Matches: 95,  Mismatches: 11, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  41   81  0.85
  42   14  0.15

ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36


Consensus pattern (41 bp):   
TTAGCGACGTTTTCTCATAAACGCCACTAATGCTCTGACAT
Done.