Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002551.1 Kokia drynarioides strain JFW-HI SEQ_114741, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24386
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:975 original size:36 final size:36

Alignment explanation


    Indices: 926--1030  Score: 192
    Period size: 36  Copynumber: 2.9  Consensus size: 36

        916 AATTTTTTTG

                    *     *                     
        926 GGTTAATGGGTTTCGAAGATTCAAGCTTTGAGATAA
          1 GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGATAA

                                                
        962 GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGATAA
          1 GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGATAA

                                             
        998 GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGA
          1 GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGA

       1031 GAGATTTGTA


Statistics
Matches: 67,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   67  1.00

ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33


Consensus pattern (36 bp):   
GGTTAATGAGTTTCAAAGATTCAAGCTTTGAGATAA

Found at i:8968 original size:31 final size:31

Alignment explanation


    Indices: 8933--9001  Score: 93
    Period size: 31  Copynumber: 2.2  Consensus size: 31

       8923 CCTAATAGTC

                  *                *       
       8933 CAATGATTTAAATAAAAACATTCGAATAAAT
          1 CAATGACTTAAATAAAAACATTCAAATAAAT

                               *       * * 
       8964 CAATGACTTAAATAAAAACTTTCAAATTATT
          1 CAATGACTTAAATAAAAACATTCAAATAAAT

                   
       8995 CAATGAC
          1 CAATGAC

       9002 CATTTTATAA


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30


Consensus pattern (31 bp):   
CAATGACTTAAATAAAAACATTCAAATAAAT
Done.