Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002553.1 Kokia drynarioides strain JFW-HI SEQ_114746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2550
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Found at i:374 original size:215 final size:216
Alignment explanation
Indices: 1--2513 Score: 2887
Period size: 216 Copynumber: 11.7 Consensus size: 216
* * *
1 AACAAAGAGAGAAACAATTCTGACGTAAATAAGTATTTAATTCAAAGAACAAAACTTGTTTACAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * *
66 AATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAGTGTTTGGAAAATAGCTCT
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
* * *
131 AAGGAATGGATCTTGTTGAATACTTTTGGGAACCGAATTTAAAAAATAACTCGTAAAAGATTTG-
131 AAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAG-TTTGA
*
195 CAA-TTCGAAAGTTCTTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* *
216 ATCAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * *
281 AATGGCAAACTATTTAGACCAAATGATGCTATTTCCCGAGCAT-GAAGTGTTCGAAAAATAGCTC
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTCGAAAAATTGCTC
* * * *
345 TAAGGAATGGATCTTTTTGAATACTTTTGGGAAACGAATTTAAAAAATAACTCGTAAAAGATTTG
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAG-TTTG
410 -CAA-TTCGAAAGTTCGTCCAAG
194 ACAAGTTCGAAAGTTCGTCCAAG
* * * *
431 AACAAAGAGAGAAAAAATTCTCACATAAATATGTTTTTAATTCAAAGTCCAAAACTTGTTTACAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
** * * *
496 AATGACAAACTATTTAGACCAAATGATTTGATTTCTCGATCGTGGAATGTTC-AAAAATTTGCTC
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TTGCTC
* * * *
560 TAAGGAATGGATCTTGTTGAATTCTTTAGGGAATCGAAGTTAAAAAATAACTCGTAAAAGTTTAA
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
625 CAAGTTCGAAAGTTCGTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* * * *
647 AACAAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGGCCAAAACTTGTTTGCGA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * *
712 AATGACAAACTCTTTAGATCAAATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCA
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
* * *** ** * * * * *
777 AAGGAATGGATCGTCTTGAATACTTTAAGGAAGTTAAGTTATGAAAGATCTC-CACGAAGTTAGA
131 AAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTA-AAAGTTTGA
* * *
841 CAAGTTCGATAGATCGTCCATG
195 CAAGTTCGAAAGTTCGTCCAAG
* * * * * ** *
863 AACCAAGAGAGATACAATTATCTCGT--A-AA-TTTTTAATTCAAAGACTAGTACTTGTTTGCAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * * * * *
924 AATGACAAAATATTTAAATCAAATGATGCGATTTCTCGCGTATGGAATGTTAGGAAAATTGCTTT
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
* * * *
989 AAGGATTGGATCTTATTGAATACTGTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAGTTT-AC
131 AAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA-
* *
1053 CAAGTTCGGAAGTACGTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* * *
1075 AACAGAA-AGAGAAACAATTCTCACGTGAATAAGTTTTTAACTCAAAGAACAAAACTTGTTTACA
1 AACA-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * * * * * *
1139 AAATGGCATACTATTTAGACCAAATAATGCGATTTCCCAAGCGTGGAGTGTTCAAAAAATAGCTC
65 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
* * * * *
1204 TAAGGAATGGATCTTGTTTAAAACTTTAGGGAACCAAAGTTAAAAAA-GA-TC-T---AGTATTG
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGT-TTG
* * *
1263 -C-ATTTCAAAATTTCGTCCAAG
194 ACAAGTTCGAAAGTTCGTCCAAG
* * *
1284 AACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCGAAACTTGTTTCCAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
** * *
1349 AATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-AGAAATTTTCTC
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTC
* * * *
1413 TTAGGAATGCATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGA
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
*
1478 CAAGTTTGAAAGTTCGTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* *
1500 AACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * ** * * *
1565 AATGATAAACAATTTCGACCAAATGATGCGATTTTACAAGCATGGAATGTTCGAAAAATTGTTCG
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
* * * * * * * * * * * *
1630 AAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTATAGAAGAACTAGTTAAAGTTTGAC
131 AAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAC
*
1695 AAGTTTGAAAGTTCGTCCAAG
196 AAGTTCGAAAGTTCGTCCAAG
*
1716 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-G
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACA
* * * *
1780 AAATGATAAACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTC-AGAAAATTGTT
65 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCT
* * * * * * * * * * * * *
1844 CGAA-AAATTGTTCGTCTTGAATACTTTAAGTATCCGATGTTATAGAAGAACTAGTAAAAGTTTG
129 CTAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTG
* *
1908 ACAAGTTCGAATGTTCATCCAAG
194 ACAAGTTCGAAAGTTCGTCCAAG
* * *
1931 AACAAACAGAGAAACAATTCTCACGTAAATAAGTATTTAATTAAAAGACCAAAACTTGTTTGA-A
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACA
* * * *
1995 AAA--A-AAA--ATTTAGACCAAATGTTGTGATTTGCCGAGCATGGAATGTTCGAAAAATAGCTC
65 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
* * * * * * * *
2055 GAAGGAATGGATCGTCTTGAATACTTTATGGATCCGAAGTTATAAAAGACCTAG-AAAAGTTTGA
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
*
2119 CAAGTTCGAAATTTCGTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* * * *
2141 AACAATGAGAGAAACAATTCTCGCATAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* ** * * * *
2206 AATTACAAACTATTTAGACCAAATGATTTGATTTCCCGACCGTGGAATGTTTCG-AAATTTTCTC
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTC
* *
2270 TAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGA
130 TAAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
* *
2335 TAAGTTTGAAAGTTCGTCCAAG
195 CAAGTTCGAAAGTTCGTCCAAG
* *
2357 AACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * * *
2422 AATGATAAACTATTTAGACCAAATGATGAGATTTCACAAGCATGAAATGTTCGAAAAATTGTTCG
66 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
* * * *
2487 AAAGAATAGATCGTATTGAATACTTTA
131 AAGGAATGGATCTTCTTGAATACTTTA
2514 AGTATCCGAT
Statistics
Matches: 1968, Mismatches: 290, Indels: 79
0.84 0.12 0.03
Matches are distributed among these distances:
208 3 0.00
209 166 0.08
210 139 0.07
211 48 0.02
212 168 0.09
213 10 0.01
214 17 0.01
215 597 0.30
216 815 0.41
217 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCT
AAGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAC
AAGTTCGAAAGTTCGTCCAAG
Found at i:1776 original size:641 final size:640
Alignment explanation
Indices: 1--2513 Score: 2844
Period size: 641 Copynumber: 3.9 Consensus size: 640
* *
1 AACAAAGAGAGAAACAATTCTGACGTAAATAAGTATTTAATTCAAAGAACAAAACTTGTTTACAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTT-CAA
* * *
66 AATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAGTGTTTGGAAAATAGCTCT
65 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATAGCTCT
* * * * *
131 AAGGAATGGATCTTGTTGAATACTTTTGGGAACCGAATTTAAAAAATAACTCGTAAAAGATTTG-
130 AAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAAGAACTCGTAAAAG-TTTGA
* *
195 CAA-TTCGAAAGTTCTTCCAAGATCAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
194 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
259 AAAGACTAAAACTTGTTTACAAAATGGCAAACTATTTAGACCAAATGATGCTATTTCCCGAGCAT
259 AAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * *
324 -GAAGTGTTCGAAAAATAGCTCTAAGGAATGGATCTTTTTGAATACTTTTGGGAAACGAATTTAA
324 GGAA-TGTTCGAAAAATTGTTCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCAAAGTTAA
*
388 AAAATAACTCGTAAAAGATTTG-CAA-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAAAAATTC
388 AAAATAACTCGTAAAAG-TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * *
451 TCACATAAATATGTTTTTAATTCAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
452 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
** * * * * *
516 AAATGATTTGATTTCTCGATCGTGGAATGTTCAAAAATTTGCTCTAAGGAATGGATCTTGTTGAA
517 AAATGATGCGATTTCACAAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATCTTGTTGAA
* * * * *
581 TTCTTTAGGGAATCGAAGTTAAAAAATAACTCGTAAAAGT-TTAACAAGTTCGAAAGTTCGTCCA
582 TACTTTAGGGAACCGAAGTTAAAAAA-GA-TC-T---AGTATT-GCAAGTTC-AAATTTCGTCCA
645 AG
639 AG
* * * *
647 AACAAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGGCCAAAACTTGTTTGCGA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTT-CAA
* * * * *
712 AATGACAAACTCTTTAGATCAAATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGCTCA
65 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATAGCTCT
* *** ** * * * *
777 AAGGAATGGATCGTCTTGAATACTTTAAGGAAGTTAAGTTATGAAAGATCTC-CACGAAGTTAGA
130 AAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAAGAACTCGTA-AAAGTTTGA
* * * * * * *
841 CAAGTTCGATAGATCGTCCATGAACCAAGAGAGATACAATTATCTCGT--A-AA-TTTTTAATTC
194 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* ** * * * * * *
902 AAAGACTAGTACTTGTTTGCAAAATGACAAA-ATATTTAAATCAAATGATGCGATTTCTCGCGTA
259 AAAGACCAAAACTTGTTTACAAAATGACAAACA-ATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * *
966 TGGAATGTTAGGAAAATTGCTT-TAAGGATTGGATCTTATTGAATACTGTAGGGAACCAAAGTTA
323 TGGAATGTTCGAAAAATTG-TTCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCAAAGTTA
* *
1030 AAAAATAACTCGTAAAAGTTT-ACCAAGTTCGGAAGTACGTCCAAGAACAGAA-AGAGAAACAAT
387 AAAAATAACTCGTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACAAT
* * * * *
1093 TCTCACGTGAATAAGTTTTTAACTCAAAGAACAAAACTTGTTTACAAAATGGCATACTATTTAGA
450 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* * * * * *
1158 CCAAATAATGCGATTTCCCAAGCGTGGAGTGTTCAAAAAATAGCTCTAAGGAATGGATCTTGTTT
515 CCAAATGATGCGATTTCACAAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATCTTGTTG
* * *
1223 AAAACTTTAGGGAACCAAAGTTAAAAAAGATCTAGTATTGC-ATTTCAAAATTTCGTCCAAG
580 AATACTTTAGGGAACCGAAGTTAAAAAAGATCTAGTATTGCAAGTTC-AAATTTCGTCCAAG
* * *
1284 AACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCGAAACTTGTTTCCAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTT-CAA
** * * **
1349 AATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCAGAAATTTTCTCT
65 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATAGCTCT
* * * * * *
1414 TAGGAATGCATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGAC
130 AAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGAC
* *
1479 AAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA
195 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * ** *
1544 AAGACCAAAACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATTTTACAAGCATG
260 AAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * * * * * * * *
1609 GAATGTTCGAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGTATCCGATGTTATAG
325 GAATGTTCGAAAAATTGTTCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCAAAGTTAAAA
* * * *
1674 AAGAACTAGTTAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCA
390 AATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCA
* *
1739 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-GAAATGATAAACTATTTAGACCAA
455 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAA
* * * * * * * *
1803 ATGATGCGATTTCACAAGCATGGAATGTTCAGAAAATTGTTCGAA-AAATTGTTCGTCTTGAATA
519 ATGATGCGATTTCACAAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATCTTGTTGAATA
* * * * * * * * *
1867 CTTTAAGTATCCGATGTTATAGAAGAACTAGTAAAAGTTTGACAAGTTCGAATGTTCATCCAAG
584 CTTTAGGGAACCGAAGTTAAAAAAGATCTAGT---A--TTG-CAAGTTCAAAT-TTCGTCCAAG
* * *
1931 AACAAACAGAGAAACAATTCTCACGTAAATAAGTATTTAATTAAAAGACCAAAACTTGTTTGAAA
1 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTCAAA
* * * * * *
1996 A--A-AAA-AATTTAGACCAAATGTTGTGATTTGCCGAGCATGGAATGTTCGAAAAATAGCTCGA
66 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATAGCTCTA
* * * * *
2057 AGGAATGGATCGTCTTGAATACTTTATGGATCCGAAGTTATAAAAGACCTAG-AAAAGTTTGACA
131 AGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACA
* * * *
2121 AGTTCGAAATTTCGTCCAAGAACAATGAGAGAAACAATTCTCGCATAAATAAGTTTTTAATTCAA
196 AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * ** * *
2186 AGACCAAAATTTGTTTACAAAATTACAAACTATTTAGACCAAATGATTTGATTTCCCGACCGTGG
261 AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* *
2251 AATGTTTCG--AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAA
326 AATG-TTCGAAAAATTGT-TCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCAAAGTTAAA
* *
2314 AAATAACTCGTAAAAGTTTGATAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
389 AAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * *
2379 ACGTAAAGAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGATAAACTATTTAGACCAA
454 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * * * * *
2444 ATGATGAGATTTCACAAGCATGAAATGTTCGAAAAATTGTTCGAAAGAATAGATCGTATTGAATA
519 ATGATGCGATTTCACAAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATCTTGTTGAATA
2509 CTTTA
584 CTTTA
2514 AGTATCCGAT
Statistics
Matches: 1563, Mismatches: 271, Indels: 70
0.82 0.14 0.04
Matches are distributed among these distances:
637 218 0.14
638 5 0.00
639 3 0.00
640 48 0.03
641 579 0.37
642 119 0.08
643 135 0.09
644 173 0.11
645 10 0.01
646 169 0.11
647 104 0.07
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (640 bp):
AACAAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTCAAA
ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATAGCTCTA
AGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACA
AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTTCCCGAGCATGG
AATGTTCGAAAAATTGTTCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCAAAGTTAAAAA
ATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCACAAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACT
TTAGGGAACCGAAGTTAAAAAAGATCTAGTATTGCAAGTTCAAATTTCGTCCAAG
Done.