Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002555.1 Kokia drynarioides strain JFW-HI SEQ_114751, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3499
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32


Found at i:840 original size:29 final size:31

Alignment explanation


    Indices: 770--840  Score: 85
    Period size: 31  Copynumber: 2.4  Consensus size: 31

        760 TACCCAATTG

                                          * 
        770 AAATTAAAACA-TAAATATCCAAAATCCATGA
          1 AAATTAAAA-ATTAAATATCCAAAATCCATAA

                                       *   
        801 AAATTAAAAATTAAATAT-CAAAA-CCTTAA
          1 AAATTAAAAATTAAATATCCAAAATCCATAA

                 *     
        830 AAATTCAAAAT
          1 AAATTAAAAAT

        841 AATCAAAATT


Statistics
Matches: 36,  Mismatches: 3, Indels: 4
        0.84            0.07        0.09

Matches are distributed among these distances:
  29   14  0.39
  30    6  0.17
  31   16  0.44

ACGTcount: A:0.61, C:0.13, G:0.01, T:0.25


Consensus pattern (31 bp):   
AAATTAAAAATTAAATATCCAAAATCCATAA
Done.