Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002557.1 Kokia drynarioides strain JFW-HI SEQ_114753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5200
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35


Found at i:79 original size:23 final size:24

Alignment explanation


    Indices: 52--98  Score: 78
    Period size: 23  Copynumber: 2.0  Consensus size: 24

         42 CGTTTCCAAA

                          *         
         52 CCCCTTTTTTTTT-GAAACGTTTT
          1 CCCCTTTTTTTTTAAAAACGTTTT

                                    
         75 CCCCTTTTTTTTTAAAAACGTTTT
          1 CCCCTTTTTTTTTAAAAACGTTTT

         99 ATTCGATTTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  23   13  0.59
  24    9  0.41

ACGTcount: A:0.17, C:0.21, G:0.06, T:0.55


Consensus pattern (24 bp):   
CCCCTTTTTTTTTAAAAACGTTTT

Done.