Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002558.1 Kokia drynarioides strain JFW-HI SEQ_114755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35


Found at i:777 original size:16 final size:16

Alignment explanation


    Indices: 756--789  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        746 CTAAATCAAG

                            
        756 TAGAGGAGAAGATGAA
          1 TAGAGGAGAAGATGAA

                            
        772 TAGAGGAGAAGATGAA
          1 TAGAGGAGAAGATGAA

              
        788 TA
          1 TA

        790 AGAACTGTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15


Consensus pattern (16 bp):   
TAGAGGAGAAGATGAA
Done.