Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002565.1 Kokia drynarioides strain JFW-HI SEQ_114764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18305
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34

Warning! 61 characters in sequence are not A, C, G, or T


Found at i:9243 original size:29 final size:29

Alignment explanation


    Indices: 9189--9260  Score: 67
    Period size: 29  Copynumber: 2.4  Consensus size: 29

       9179 AATAGTTTAT

                          *               
       9189 ATTTTTATTATTTTTAAAATATAAAT-TAA
          1 ATTTTTATTATTTTCAAAATATAAATAT-A

                             **           
       9218 ATTTTTATTATTTTCAAGGTCA-AAATATA
          1 ATTTTTATTATTTTCAAAAT-ATAAATATA

                          
       9247 ATTTTATCATTATT
          1 ATTTT-T-ATTATT

       9261 AATTTAAAAT


Statistics
Matches: 36,  Mismatches: 3, Indels: 6
        0.80            0.07        0.13

Matches are distributed among these distances:
  29   27  0.75
  30    3  0.08
  31    6  0.17

ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54


Consensus pattern (29 bp):   
ATTTTTATTATTTTCAAAATATAAATATA

Found at i:9885 original size:10 final size:8

Alignment explanation


    Indices: 9862--9887  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       9852 TTGTATTTGT

                    
       9862 ATTCTCTC
          1 ATTCTCTC

                    
       9870 ATTCTCTC
          1 ATTCTCTC

                    
       9878 ATTCTCTC
          1 ATTCTCTC

              
       9886 AT
          1 AT

       9888 CAATATCCTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50


Consensus pattern (8 bp):   
ATTCTCTC

Found at i:15716 original size:7 final size:7

Alignment explanation


    Indices: 15704--15732  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

      15694 AGGGAAGGTA

                   
      15704 GTATTTG
          1 GTATTTG

                   
      15711 GTATTTG
          1 GTATTTG

                   
      15718 GTATTTG
          1 GTATTTG

                   
      15725 GTATTTG
          1 GTATTTG

             
      15732 G
          1 G

      15733 GCAAGTGGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.14, C:0.00, G:0.31, T:0.55


Consensus pattern (7 bp):   
GTATTTG

Done.