Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002566.1 Kokia drynarioides strain JFW-HI SEQ_114765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 725

Length: 1209
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:999 original size:7 final size:7

Alignment explanation


    Indices: 987--1025  Score: 51
    Period size: 7  Copynumber: 5.4  Consensus size: 7

        977 CTTTTTGTAA

                   
        987 TATTTTT
          1 TATTTTT

                   
        994 TATTTTT
          1 TATTTTT

                 * 
       1001 TATTTAT
          1 TATTTTT

                   
       1008 TATTTTT
          1 TATTTTT

             *      
       1015 CGATTTTT
          1 -TATTTTT

               
       1023 TAT
          1 TAT

       1026 AAAATTTTCC


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
   7   21  0.78
   8    6  0.22

ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77


Consensus pattern (7 bp):   
TATTTTT

Found at i:1151 original size:22 final size:24

Alignment explanation


    Indices: 1092--1137  Score: 67
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1082 AGCATTTTGT

                      *              
       1092 TAAAAAATAATAA-TCAAATTAAAC
          1 TAAAAAATAAAAACTC-AATTAAAC

                                  
       1116 TAAAAAATAAAAACTCAATTAA
          1 TAAAAAATAAAAACTCAATTAA

       1138 CAAAATATAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  24   18  0.90
  25    2  0.10

ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24


Consensus pattern (24 bp):   
TAAAAAATAAAAACTCAATTAAAC
Done.