Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002573.1 Kokia drynarioides strain JFW-HI SEQ_114774, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3976
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34


Found at i:3915 original size:27 final size:26

Alignment explanation


    Indices: 3884--3946  Score: 71
    Period size: 22  Copynumber: 2.5  Consensus size: 26

       3874 ACCTTAGTGC

                                       
       3884 GCTCTCCATTTATTTAGCACGTATTGT
          1 GCTCTCCATTTATTTAGCACG-ATTGT

                      *          *    
       3911 GCTCTCC---GA-TTAGCACGCTTGT
          1 GCTCTCCATTTATTTAGCACGATTGT

                          
       3933 GCTCTCCATTTATT
          1 GCTCTCCATTTATT

       3947 AGTGCATTGT


Statistics
Matches: 29,  Mismatches: 3, Indels: 9
        0.71            0.07        0.22

Matches are distributed among these distances:
  22   11  0.38
  23    8  0.28
  24    1  0.03
  25    1  0.03
  26    1  0.03
  27    7  0.24

ACGTcount: A:0.16, C:0.27, G:0.16, T:0.41


Consensus pattern (26 bp):   
GCTCTCCATTTATTTAGCACGATTGT

Done.