Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000258.1 Kokia drynarioides strain JFW-HI SEQ_110997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1241
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38


Found at i:479 original size:139 final size:139

Alignment explanation


    Indices: 244--806  Score: 901
    Period size: 139  Copynumber: 4.1  Consensus size: 139

        234 ATTTGCTTAT

                *             *   *      *       *          *              * 
        244 GAATTTGGTTCACTTCTCAGTACCTCATCTGGAAGATCTGCTCGTTTCAAGCCTCGTTTGGGTCT
          1 GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT

            *        *        *       *                  *                   
        309 CCTTCTCAGCGTCTCATCGGGAAGATAATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCAT
         66 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCGTTTCTCTGTATCTCAT

            *        
        374 TAGGAAGAC
        131 CAGGAAGAC

                                                       *                *    
        383 GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCTTTTCGAGCCTCGTTTGAGTTT
          1 GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT

                                               *                             
        448 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCGCTGTTTCGACCCGTTTCTCTGTATCTCAT
         66 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCGTTTCTCTGTATCTCAT

                     
        513 CAGGAAGAC
        131 CAGGAAGAC

                             *          *                                    
        522 GAATCTGGTTCACTTCTTCGTATCTCATTAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT
          1 GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT

                                               *       *                     
        587 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCGCTGTTTCAACCCGTTTCTCTGTATCTCAT
         66 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCGTTTCTCTGTATCTCAT

                     
        652 CAGGAAGAC
        131 CAGGAAGAC

                                        *                         *          
        661 GAATCTGGTTCACTTCTCCGTATCTCATTAGGAAGATTTGCTCGTTTCGAGCCTTGTTTGGGTTT
          1 GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT

                                          **             *                   
        726 TCTTCTCAGTGTCTCATCAGGAAGATGATCTTATCACTGTTTCGATCCGTTTCTCTGTATCTCAT
         66 TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCGTTTCTCTGTATCTCAT

                     
        791 CAGGAAGAC
        131 CAGGAAGAC

                   
        800 GAATCTG
          1 GAATCTG

        807 CTTTGTGGAT


Statistics
Matches: 396,  Mismatches: 28, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 139  396  1.00

ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36


Consensus pattern (139 bp):   
GAATCTGGTTCACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTT
TCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCGTTTCTCTGTATCTCAT
CAGGAAGAC

Done.