Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002580.1 Kokia drynarioides strain JFW-HI SEQ_114782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5258
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Found at i:5232 original size:216 final size:217
Alignment explanation
Indices: 1--5253 Score: 6088
Period size: 216 Copynumber: 24.4 Consensus size: 217
* * *
1 GCATGGAATGTTCAGAAAAA-TGCTC-AAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTC-
1 GCATGGAATGTTC-GAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGG-A-TCCA
* ** * ** * *
63 -AGTTATAAAAGATCTCTTCAAAA-TTTGACAAGTTC-AGGAGTTCGTCCACTAACCAAGAGTGA
63 AAGTTATAAAAGAACTAGT-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGA
** * * *
125 TGCAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTCTTTACAAAATGACAAACTA
126 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTA
* *
190 TTTAGACCAAATGATACGATTTCTCGA
191 TTTAGACCAAATGATGCGATTTCCCGA
* * * * *
217 GCATGGAATGTTCGGAAAATTGCT--ATAAGGAATGGATCTTGTTGAATACTATAAGGAACCGAA
1 GCATGGAATGTTCGAAAAATTGCTCGA-AAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
* * * * * * *
280 GTTA-AAATATAACTCA-TAAAAGTTTGACAGGTTCGACAGTTCATAC-AGAGGCAAAGGGAGAA
65 GTTATAAA-AGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAA
* *
342 ACAATTCTCACGTAAATAAGCTTTTAATTCAAAGACAAAAACTTGTTTGCAAAATGACAAACTAT
127 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTAT
** *
407 TTAGGTCAAATGATGCGATTTGCCGA
192 TTAGACCAAATGATGCGATTTCCCGA
* * * **
433 GCATGGAATATTCAAAAAATTGCTCG-AAGGAATGGAT-TATCTTAAATACTTTAAGGATCTGAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCT-TCTTGAATACTTTAAGGATCCAAA
*
496 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* *** *
561 ATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTACACAAAATGACAAATTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
*
626 GACCAAATGATGCGATTTCCCAA
195 GACCAAATGATGCGATTTCCCGA
* * * * * **
649 GGATGGAATGTTCGAAAAATTGCTC-AAAAGAATGGATCTTCTT-ATTACTTTAGGGAACTGAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * * * *
712 TTAAAAAATATCTCGTAAAAGTTTGACAGGTTC-AGAAGTTCGTCCAAGAACAAATAGAGAAACA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACA
* * * *
776 ATTCTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTATACAAAATGGA-AAACTATTT
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAAT-GACAAACTATTT
* *
840 AGACCAAATGATGTGATTTCCCAA
194 AGACCAAATGATGCGATTTCCCGA
* * * * * * * **
864 GGATGGAATGCTC-AGAAAGTTGCTC-AAAGGAATGGATCTTGTTGATTACTTTAGGGAACTGAA
1 GCATGGAATGTTCGA-AAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
* * * * * * * *
927 GTTAAAAAATAACTCGTAAAAGTTTGACAAGTTTGGAA-CTCGGTCCAAAAACAAAGACAGAAAC
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACAAAGAGAGAAAC
* * *
991 AATTCTCACATAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTT
129 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
*
1056 AGACCAAATGATGCGATTTGCCGA
194 AGACCAAATGATGCGATTTCCCGA
* * * * * * * *
1080 GCATGGAATATTCTAAATATT-ATTGAATGGAATGGA---TC--G--T-C-ATGAGGATCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
*
1135 TTTATAAAAGAACTAGTAAAAGTTTGACGAGTTCGAAAGTTCGTCCAAGAAC-AA-AGAG-----
66 -TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* *
1193 A--CTCACGTAAATAAGTTTTGAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
** *
1256 GACCAAATGATGTAATTTCCCAA
195 GACCAAATGATGCGATTTCCCGA
** * * * * * *
1279 GGTTGGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGTTGAATACTTTAGGGAACTAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * * * *
1343 TTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAAAAAGAAACAA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * *
1408 TTCTCACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAG
131 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * ***
1472 GCAAAATGATGCGATTTGTGGA
196 ACCAAATGATGCGATTTCCCGA
* * * * * *
1494 GTATGGAATGTT-TAGAAAATTGCTCGAAA-GAATAGATCGTCTTGAATACTTTAAGCATCCTAA
1 GCATGGAATGTTCGA-AAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
* * * *
1557 GTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* * *
1622 ATTCTCACGT-AATAAG-TTTTACATTTAAAGACCAAAACTTGTTTGCAGAATGACAAATTATTT
130 ATTCTCACGTAAATAAGTTTTTA-ATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
* **
1685 AGACC-AATGATGTGATTTTTCGA
194 AGACCAAATGATGCGATTTCCCGA
** * * * * *
1708 GCATGGAAAATTCGGAAAATTGCT-GAAATGAATGGGTCGTCTTGAATACTTTAAGGTTCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
*
1772 TTATAAAAGAACTAGTAAAAGGTTGTGAAGTTCGGAAGTTCGGAAGTTCGTCCAAGAACAAAGAG
66 TTATAAAAGAACTAGTAAAA-GTT-TG-A---C--AAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * * * *
1837 AGAAACAATTCTCACGTAAATAAGTTCTTAATTCAACGACCAAAACTTGCTTACAAAACGACAAA
123 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAA
* * *
1902 CTATTTAGACCAAGTGACGCGATTTCCCAA
188 CTATTTAGACCAAATGATGCGATTTCCCGA
* * * * * * * **
1932 GGATGGAATGTTAGAAAAATTGCTCTAAA-AAATGGATCTTGTTGAATACTTTAGGGAACTGAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * *
1996 TTAAAAAATAACTCGTAAAAGTTTGACAAGGTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * * *
2061 TTCTCACGT-AATAAGTTTTTAATTTAAAGAACAAAACTTGTTTGCAAAATGACAAATTATTTTG
131 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* *
2125 ACCAAATGGTGCGATTTCACGA
196 ACCAAATGATGCGATTTCCCGA
* * * * * *
2147 GAATGGAATGTT-TAGAAAATTGCTCGGAA-GAATAGATCATCTTGAATACTTTAAGGATCCATA
1 GCATGGAATGTTCGA-AAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
* * * *
2210 GTTATAAAAGAACTAGTAAAAGTTTGACAGGTTCGGAACTTTGTCCAAGAACAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* * *
2275 ATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTACTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
2340 GACCAAATGATGCGATTTCCCGA
195 GACCAAATGATGCGATTTCCCGA
* * * **
2363 GCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAAAACTTTAGGGAAT-TGAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGG-ATCCAAA
* * * *
2426 GTTAAAAAACAACTCA-TAAAAGTTTCACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAAC
65 GTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAAC
2490 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
129 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
*
2555 AGACCAAATGATGCGATTTCTCGA
194 AGACCAAATGATGCGATTTCCCGA
* * * * * **
2579 GGATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAATACATTAGGGAACTGAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * * * *
2643 TTAAAAAATAACTCA-TAAAAGTTTTACAATTTCGAAAGTTCGTCCAACAACAAAGTGAGAAACA
66 TTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* *
2707 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTGCAAAATGATAAACTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
* *
2772 GACCAAATGATACGATTTCTCGA
195 GACCAAATGATGCGATTTCCCGA
* * * * **
2795 GCATGGAATGTTGGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * * * *
2859 TTAAAAAATAACTCA-TAAAAGTTTTAAAATTTCGAAAGTTCGTCCAGGAACAAAGAGAGAAACA
66 TTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* * * * *
2923 ATTCTCACGT-AATATGTTTTTTAATTTAAAGACCAAAACTTGTTTGCAGAATAACAAATTATTT
130 ATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
2987 AGACCAAATGATGCGATTTCCCGA
194 AGACCAAATGATGCGATTTCCCGA
* * *
3011 GCATGGAATGTTC-AGAAAATTGCTCGAAA-GAATAGATCGTCTTGAATACATTAAGGATCCAAA
1 GCATGGAATGTTCGA-AAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
** * *
3074 GTTATAAAAGAACTAGTAAAAGTTTGGTAGGTTCGAAACTTCGTCCAAGAACAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* * *
3139 ATTCTCACGTAAATAAGTTTTTAATTAAAAGGCCAAAACTTGTTAGCAAAATGACAAACTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
* *
3204 GGCCAAATGATGCGATTTACCGA
195 GACCAAATGATGCGATTTCCCGA
* * * * *
3227 GCAAGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAATACTTTAGGGAACTAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * * *
3291 TTGA-AAAATAACTCA-TAAAAGTTTTACAATTTTGAAAGTTCGTCCAGGAACAAAGAGAGAAAC
66 TT-ATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAAC
*
3354 AATTCTCACGTAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
129 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
* * *
3419 AGGCCAAATGATGCGATTTGCCAA
194 AGACCAAATGATGCGATTTCCCGA
* * * * * *
3443 GCATGGAATATTTGAAAAATTGCTCG-ACGGAACGGATCGTCTTGAATAATTTAAGGATCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* *
3507 TTATAAAAGAACTAGTAAAAGGTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * *
3572 TCCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
131 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * *
3637 ACCAAGTGACGCGATTTCCCAA
196 ACCAAATGATGCGATTTCCCGA
* * * * * * **
3659 GGATGGAATGTTCGAAAAATTGCTCTAAA-AAATGGATCTTGTTGAATA-GTTAAGGGAACTGAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAA-GGATCCAAA
* * * *
3722 GTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA-AAAAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* * * *
3786 ATTCTCACGT-AATAAGTTTTTAATTTAAAGAACAAAACTTGTTTGCAAAATGACAAATTATTTT
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
* *
3850 GACCAAATGGTGCGAATTCCCGA
195 GACCAAATGATGCGATTTCCCGA
* * * *
3873 GAATGGAATGTT-TAGAAAATTGCTCGAAA-GAATAGATCATCTTGAATACTTTAAGGATCCAAA
1 GCATGGAATGTTCGA-AAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAA
* * *
3936 GTTATAAAAGAACTAGTAAAAGTTTGACAGGTTCGAAACTTTGTCCAAGAACAAAGAGAGAAACA
65 GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
*
4001 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
4066 GACCAAATGATGCGATTTCCCGA
195 GACCAAATGATGCGATTTCCCGA
* * * * *
4089 GTATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCTTGTTGAATACTTTAGGGAACTGAAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATC-CAAA
* * * * *
4153 -TTAAAAAATAACTCA-TAAAATTTTTAC-ATTTACGAAAGTTCGTCCAAGAACAAAGAGAGAAA
65 GTTATAAAAGAACT-AGTAAAAGTTTGACAAGTT-CGAAAGTTCGTCCAAGAACAAAGAGAGAAA
4215 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATT
128 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATT
** *
4280 TTTACCAAATGATGCGATTTCTCGA
193 TAGACCAAATGATGCGATTTCCCGA
* * * * *
4305 GCATGAAATGTTCGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATC-CAAA
* * * *
4369 -TTAAAAAATAACTCA-TAAAAGTTTTAC-ATTTACGAAAGTTCGTCCAAGAACAAAGAGAGAAA
65 GTTATAAAAGAACT-AGTAAAAGTTTGACAAGTT-CGAAAGTTCGTCCAAGAACAAAGAGAGAAA
*
4431 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGTAAAATGACAAACTATT
128 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATT
** *
4496 TTTACCAAATGATGCGATTTCTCGA
193 TAGACCAAATGATGCGATTTCCCGA
* * * * *
4521 GTATGGAATGTTTGAAAAATTGCTCG-AAGGAATGGATCTTGTTGAATACTTTAGGGA-CCTGAA
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCC-AAA
* * * * * *
4584 GTTAAAAAATAACTCA-TAAAAGTTTTACAATTTCGAAAGTTCGTCCATGAATAAAGAGAGAAAC
65 GTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAAC
* * *
4648 AATTCTCACTTAAATAAGTTTTTAATTCAAAGAACAAAACTTGTTTGCAAAATGACAAACTAGTT
129 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTT
* * **
4713 AGGCCAAATGATACGATTTGTCGA
194 AGACCAAATGATGCGATTTCCCGA
* * * ** *
4737 GCATGGAATATTTGAAAAATTGCTCG-AAGGAACGGATCGACTTGAATAATTTAAGGATCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
* * * *
4801 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATACAA-AGACAAAGAAAGAACCA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACA
* * * *
4865 ATTCTCACTTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTGCTAAATGACAAACTATTTA
130 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTA
* *
4930 GACCAAATGATGCGACTTGCCGA
195 GACCAAATGATGCGATTTCCCGA
* ** * * * * *
4953 GCATTGAAAATTTGGAAAATTGCT-GAAATGAATGGATCCTCTTGAATACTTTATGGATCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
*
5017 TTATAAAAGAACTAGTAAAAGTTTGAGAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
66 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * *
5082 TTCTCACGTAAAGAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAG
131 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
*
5147 ACCAAATGATGCGATTTACCGA
196 ACCAAATGATGCGATTTCCCGA
* ** * * * * *
5169 GCTTGGAAAATTTGGAAAATTGCT-GAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAG
1 GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
*
5233 TTATAAAAGAACTAGCAAAAG
66 TTATAAAAGAACTAGTAAAAG
5254 GTTGT
Statistics
Matches: 4375, Mismatches: 562, Indels: 200
0.85 0.11 0.04
Matches are distributed among these distances:
199 98 0.02
200 3 0.00
201 1 0.00
202 1 0.00
204 1 0.00
206 4 0.00
207 57 0.01
208 52 0.01
209 6 0.00
211 1 0.00
213 6 0.00
214 248 0.06
215 699 0.16
216 2983 0.68
217 37 0.01
218 1 0.00
221 1 0.00
222 47 0.01
223 48 0.01
224 78 0.02
225 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (217 bp):
GCATGGAATGTTCGAAAAATTGCTCGAAAGGAATGGATCTTCTTGAATACTTTAAGGATCCAAAG
TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
ACCAAATGATGCGATTTCCCGA
Done.