Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002581.1 Kokia drynarioides strain JFW-HI SEQ_114784, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30


Found at i:1045 original size:16 final size:16

Alignment explanation


    Indices: 1024--1057  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1014 ATAAGTGTTT

                            
       1024 ATATAAGTCTTAGGGC
          1 ATATAAGTCTTAGGGC

                            
       1040 ATATAAGTCTTAGGGC
          1 ATATAAGTCTTAGGGC

              
       1056 AT
          1 AT

       1058 TCCATCTCTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32


Consensus pattern (16 bp):   
ATATAAGTCTTAGGGC

Found at i:1430 original size:52 final size:52

Alignment explanation


    Indices: 1331--1430  Score: 139
    Period size: 52  Copynumber: 1.9  Consensus size: 52

       1321 TATGCAAGTG

                                                     **         
       1331 GAACCTAATTGGTACAACCGAAAGATTCTGTGTTACCATCGGTAAAGTAGAT
          1 GAACCTAATTGGTACAACCGAAAGATTCTGTGTTACCATCGACAAAGTAGAT

                              *    *           *             
       1383 GAACCTAATTGCG-ACAATCGAAGGATTCTGTGTTGCCATCGACAAAGT
          1 GAACCTAATTG-GTACAACCGAAAGATTCTGTGTTACCATCGACAAAGT

       1431 GGAGTGCTCC


Statistics
Matches: 42,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  52   41  0.98
  53    1  0.02

ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Consensus pattern (52 bp):   
GAACCTAATTGGTACAACCGAAAGATTCTGTGTTACCATCGACAAAGTAGAT
Done.