Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002582.1 Kokia drynarioides strain JFW-HI SEQ_114785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 918

Length: 1531
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29


Found at i:1397 original size:52 final size:52

Alignment explanation


    Indices: 1297--1397  Score: 132
    Period size: 52  Copynumber: 1.9  Consensus size: 52

       1287 ATATGCAAGT

                                            *         **        
       1297 GGAACCTAATTGGTACAACCGAAAGATTCTGTGTTACCATCGGTAAAGTAGA
          1 GGAACCTAATTGGTACAACCGAAAGATTCTGTATTACCATCGACAAAGTAGA

                               *                **            
       1349 GGAACCTAATTGCG-ACAATCGAAAGATTCTGTATTGTCATCGACAAAGT
          1 GGAACCTAATTG-GTACAACCGAAAGATTCTGTATTACCATCGACAAAGT

       1398 GGAGTGCTCC


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  52   41  0.98
  53    1  0.02

ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26


Consensus pattern (52 bp):   
GGAACCTAATTGGTACAACCGAAAGATTCTGTATTACCATCGACAAAGTAGA
Done.