Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002589.1 Kokia drynarioides strain JFW-HI SEQ_114794, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5680
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36


Found at i:46 original size:17 final size:16

Alignment explanation


    Indices: 2--65  Score: 65
    Period size: 17  Copynumber: 3.8  Consensus size: 16

          1 A

                         *  
          2 AAATAAATTTAAACTT
          1 AAATAAATTTAAATTT

                             
         18 AAATTAAATTTAAATTT
          1 AAA-TAAATTTAAATTT

                   *           
         35 ATAATAATTTTAAATTTTT
          1 A-AATAAATTTAAA--TTT

               *        
         54 AAACAAATTTAA
          1 AAATAAATTTAA

         66 TCTTAAAATA


Statistics
Matches: 40,  Mismatches: 4, Indels: 6
        0.80            0.08        0.12

Matches are distributed among these distances:
  16    3  0.08
  17   22  0.55
  18   11  0.28
  19    4  0.10

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44


Consensus pattern (16 bp):   
AAATAAATTTAAATTT

Found at i:174 original size:17 final size:18

Alignment explanation


    Indices: 148--181  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        138 TTGATTACAT

                 *            
        148 ACGAATAAA-TAAAAATA
          1 ACGAAAAAATTAAAAATA

                             
        165 ACGAAAAAATTAAAAAT
          1 ACGAAAAAATTAAAAAT

        182 TTTAACATAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18


Consensus pattern (18 bp):   
ACGAAAAAATTAAAAATA

Done.