Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002590.1 Kokia drynarioides strain JFW-HI SEQ_114797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2823
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37


Found at i:2364 original size:7 final size:8

Alignment explanation


    Indices: 2345--2369  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       2335 TAAATGGTGA

                    
       2345 AAAAAATT
          1 AAAAAATT

                    
       2353 AAAAAATT
          1 AAAAAATT

                    
       2361 AAAAAATT
          1 AAAAAATT

             
       2369 A
          1 A

       2370 TTTTATAATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24


Consensus pattern (8 bp):   
AAAAAATT
Done.