Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000026.1 Kokia drynarioides strain JFW-HI SEQ_34224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34


Found at i:406 original size:50 final size:51

Alignment explanation


    Indices: 346--454  Score: 218
    Period size: 51  Copynumber: 2.1  Consensus size: 51

        336 ACGGATGGGA

                                                               
        346 TGAAATTTTTTTAATTTCATTCGCTGAAGCTGCCAATTTTCACCATGGGCC
          1 TGAAATTTTTTTAATTTCATTCGCTGAAGCTGCCAATTTTCACCATGGGCC

                                                               
        397 TGAAATTTTTTTAATTTCATTCGCTGAAGCTGCCAATTTTCACCATGGGCC
          1 TGAAATTTTTTTAATTTCATTCGCTGAAGCTGCCAATTTTCACCATGGGCC

                   
        448 TGAAATT
          1 TGAAATT

        455 GGGCGTTGAG


Statistics
Matches: 58,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   58  1.00

ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39


Consensus pattern (51 bp):   
TGAAATTTTTTTAATTTCATTCGCTGAAGCTGCCAATTTTCACCATGGGCC
Done.