Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002605.1 Kokia drynarioides strain JFW-HI SEQ_114818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6453
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5686 original size:21 final size:21

Alignment explanation


    Indices: 5662--5712  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       5652 TATAATGATA

                                 
       5662 AAATTAAATAATATAACAGTG
          1 AAATTAAATAATATAACAGTG

                   *    *   *    
       5683 AAATTAATTAATTTAAGAGTG
          1 AAATTAAATAATATAACAGTG

             *       
       5704 AGATTAAAT
          1 AAATTAAAT

       5713 TATAGCACGA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.53, C:0.02, G:0.12, T:0.33


Consensus pattern (21 bp):   
AAATTAAATAATATAACAGTG

Found at i:5794 original size:23 final size:22

Alignment explanation


    Indices: 5749--5798  Score: 66
    Period size: 23  Copynumber: 2.2  Consensus size: 22

       5739 AATTAAAAGA

                           *      
       5749 AAAAATAATCATTAATTACATT
          1 AAAAATAATCATTAAATACATT

                                    
       5771 AGAAAATAATCATTAAAATA-ATT
          1 A-AAAATAATCATT-AAATACATT

                 
       5794 AAAAA
          1 AAAAA

       5799 CAAAACTAAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  22    5  0.20
  23   16  0.64
  24    4  0.16

ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30


Consensus pattern (22 bp):   
AAAAATAATCATTAAATACATT

Found at i:6422 original size:2 final size:2

Alignment explanation


    Indices: 6415--6453  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       6405 TAATTAACCA

                                                                      
       6415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.