Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002608.1 Kokia drynarioides strain JFW-HI SEQ_114823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124334
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3299 original size:149 final size:149
Alignment explanation
Indices: 3029--3471 Score: 787
Period size: 149 Copynumber: 3.0 Consensus size: 149
3019 AGTACAATTT
* *
3029 GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTATATGTTGGGTTGGAGTCGTTTTGACGTAC
1 GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTGTACGTTGGGTTGGAGTCGTTTTGACGTAC
* *
3094 AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTAACGGGTCCTAGCA
66 AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTGACGGGTCCTAGCG
3159 GGGTTATACTAGTGGATTC
131 GGGTTATACTAGTGGATTC
* * *
3178 GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTGTACATTGTGTTGGAGTCGTTTTGACTTAC
1 GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTGTACGTTGGGTTGGAGTCGTTTTGACGTAC
*
3243 AGTTAGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTGACGGGTCCTAGCG
66 AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTGACGGGTCCTAGCG
3308 GGGTTATACTAGTGGATTC
131 GGGTTATACTAGTGGATTC
*
3327 GTCCCTTAAAAGTTAACTCACTTTCAACACAAAGTGTACGTTGGGTTGGAGTCGTTTTGACGTAC
1 GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTGTACGTTGGGTTGGAGTCGTTTTGACGTAC
**
3392 AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCATTAACAAATTGACGGGTCCTAGCG
66 AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTGACGGGTCCTAGCG
3457 GGGTTATACTAGTGG
131 GGGTTATACTAGTGG
3472 GATTTTCGTC
Statistics
Matches: 279, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
149 279 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (149 bp):
GTCCCTTAAAAGTTAACTCGCTTTCAACACAAAGTGTACGTTGGGTTGGAGTCGTTTTGACGTAC
AGTTGGGAAGAAGAATCCATCGTGCTATATTCAAATTCCCACGAACAAATTGACGGGTCCTAGCG
GGGTTATACTAGTGGATTC
Found at i:15024 original size:36 final size:37
Alignment explanation
Indices: 14975--15049 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 37
14965 AAAATATTCC
* *
14975 TGCGGCGATAATTTT-GTTGAAAT-TTGGAAGTGCTCA
1 TGCGGCGACAATTTTGGGTGAAATCTT-GAAGTGCTCA
* *
15011 TGCGGTGACAATTTTGGGTGCAATCTTGAAGTGCTCA
1 TGCGGCGACAATTTTGGGTGAAATCTTGAAGTGCTCA
15048 TG
1 TG
15050 AAGCGACATG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 13 0.39
37 18 0.55
38 2 0.06
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (37 bp):
TGCGGCGACAATTTTGGGTGAAATCTTGAAGTGCTCA
Found at i:15064 original size:37 final size:37
Alignment explanation
Indices: 15001--15071 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
14991 TTGAAATTTG
** * *
15001 GAAGTGCTCATGCGGTGACAATTTTGGGTGCAATCTT
1 GAAGTGCTCATGAAGCGACAATTTTGGGCGCAATCTT
15038 GAAGTGCTCATGAAGCGAC-ATGTTTGGGCGCAAT
1 GAAGTGCTCATGAAGCGACAAT-TTTGGGCGCAAT
15072 TCTGTATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 2 0.07
37 27 0.93
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
GAAGTGCTCATGAAGCGACAATTTTGGGCGCAATCTT
Found at i:18431 original size:34 final size:34
Alignment explanation
Indices: 18313--18431 Score: 130
Period size: 34 Copynumber: 3.5 Consensus size: 34
18303 GTTGTAGTAT
* * *
18313 TTTGGTGTGTCAGATGGACTATCTCTTACGAGCA
1 TTTGGTGTGTTAGATGGACTAACTCATACGAGCA
* * *
18347 TTTGGTATGTTGGTTGGACTAACTCATACGAGCA
1 TTTGGTGTGTTAGATGGACTAACTCATACGAGCA
* * * **
18381 TTTGGTGTGCTGGATGGATTGGCTCATACGAGCA
1 TTTGGTGTGTTAGATGGACTAACTCATACGAGCA
*
18415 TCTGGTGTGTTAGATGG
1 TTTGGTGTGTTAGATGG
18432 TTAACCGTGT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 70 1.00
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.35
Consensus pattern (34 bp):
TTTGGTGTGTTAGATGGACTAACTCATACGAGCA
Found at i:18681 original size:11 final size:11
Alignment explanation
Indices: 18665--18698 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
18655 GACAAAGCTC
18665 TAAGCTTTATG
1 TAAGCTTTATG
*
18676 TAAGCTTTACG
1 TAAGCTTTATG
18687 TAAGCTTTATG
1 TAAGCTTTATG
18698 T
1 T
18699 TTAAATTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (11 bp):
TAAGCTTTATG
Found at i:22987 original size:36 final size:36
Alignment explanation
Indices: 22947--23023 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 36
22937 GTATGACTAT
*
22947 TGTGAAAGTGAA-TATGAT-GGCATGTTGTTCTTTCCA
1 TGTGAAAGT-AAGTATG-TGGGCATGTTGTTCTTGCCA
* * *
22983 TGTGATAGTAAGTATGTGGGTATGTTTTTCTTGCCA
1 TGTGAAAGTAAGTATGTGGGCATGTTGTTCTTGCCA
23019 TGTGA
1 TGTGA
23024 TAGCGATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
35 3 0.09
36 32 0.91
ACGTcount: A:0.22, C:0.09, G:0.27, T:0.42
Consensus pattern (36 bp):
TGTGAAAGTAAGTATGTGGGCATGTTGTTCTTGCCA
Found at i:25551 original size:20 final size:21
Alignment explanation
Indices: 25514--25553 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
25504 GTACTTCCCA
25514 AAATCTTGGAGGTATCGATATT
1 AAATCTTGGA-GTATCGATATT
25536 AAATCTTGGA-TATCGATA
1 AAATCTTGGAGTATCGATA
25554 GCCCTGCTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (21 bp):
AAATCTTGGAGTATCGATATT
Found at i:29027 original size:15 final size:16
Alignment explanation
Indices: 29007--29036 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
28997 AAGAAAACTA
29007 AATAAGAT-TTTAAAG
1 AATAAGATGTTTAAAG
29022 AATAAGATGTTTAAA
1 AATAAGATGTTTAAA
29037 AAGATATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (16 bp):
AATAAGATGTTTAAAG
Found at i:32875 original size:184 final size:182
Alignment explanation
Indices: 32534--32895 Score: 580
Period size: 184 Copynumber: 2.0 Consensus size: 182
32524 AGTCCTAAAG
*
32534 AATATTTACATATTAATTATCCTATACGATATTTAAAATTAGTTTAAAACCTTAATAAAAAAATC
1 AATATTTACATATTAATTATCCTATACGATATTTAAAATTAGTTTAAAACCCTAATAAAAAAATC
* *
32599 GTACATATTATTTATAATTTTTCTATGGTAATGGTAGATAAGATCTAAGTATAAATGCAAATGAA
66 GTACATATTATTTATAATTTTTCTATGGTAATGGTAGATAAGATCGAAGAATAAATGCAAATGAA
*
32664 ACGGAAGATATAAGTATAAATTACTTATTAAGGATGAAAACAAAATGATATA
131 ACGGAAGATATAAGTAAAAATTACTTATTAAGGATGAAAACAAAATGATATA
* ****
32716 AATATTTACATATTAATTATCTTATACGATATTTAAAATTAGTTTAAAACCCTAATAAATTTTTT
1 AATATTTACATATTAATTATCCTATACGATATTTAAAATTAGTTTAAAACCCTAATAAA-AAAAT
**
32781 TTTACATATTATTTATAATTTTTCTATGGTAAATGGTAGATAAGATCGAAGAATAAATGCAAATG
65 CGTACATATTATTTATAATTTTTCTATGGT-AATGGTAGATAAGATCGAAGAATAAATGCAAATG
* * *
32846 AAAGGGAAGATATAAGTAAAAATTACTTATTAAGGATGGAATCAAAATGA
129 AAACGGAAGATATAAGTAAAAATTACTTATTAAGGATGAAAACAAAATGA
32896 CAGCTTGATT
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
182 57 0.35
183 29 0.18
184 78 0.48
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (182 bp):
AATATTTACATATTAATTATCCTATACGATATTTAAAATTAGTTTAAAACCCTAATAAAAAAATC
GTACATATTATTTATAATTTTTCTATGGTAATGGTAGATAAGATCGAAGAATAAATGCAAATGAA
ACGGAAGATATAAGTAAAAATTACTTATTAAGGATGAAAACAAAATGATATA
Found at i:33413 original size:19 final size:18
Alignment explanation
Indices: 33372--33414 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
33362 AAATAGTTAA
*
33372 AAAAATTAAACTTTGTTT
1 AAAAATTAAACTTTCTTT
33390 AAAAATTAAACTTTTCTTT
1 AAAAATTAAAC-TTTCTTT
*
33409 TAAAAT
1 AAAAAT
33415 GCCTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (18 bp):
AAAAATTAAACTTTCTTT
Found at i:34108 original size:290 final size:289
Alignment explanation
Indices: 33322--34119 Score: 892
Period size: 289 Copynumber: 2.7 Consensus size: 289
33312 GTTTTTTTTT
* * * *
33322 AAAATCACTAATTTGCTTAAAAATCAAAACTTTTATTTTGAAATAGTTAAAAAAATTAAACTTTG
1 AAAATCACTAATTTACTTAAAAATCCAAACTTTTATTTTGAAATAGTTAAAAAAATCAAATTTTG
* * *
33387 TTTAAAAATT-AAA-CTTTTCTTTTAAAATGCCTAAAAAAACAGATTTTTTATCTTTAAAAATCT
66 TTTAAAATTTAAAATCTTTTC-TTTAAAATGACT-AAAAAACATA-TTTTTAT-TTTAAAAATCT
* * * *
33450 AAACTTTCTTTTTTTTT--GG---ATCACTACTTTACTTACAAATCCAAACATTTATTTCGAAAT
127 AAACTTTTTTTTTTTTTAAGGAAAATCACTATTTTATTTA-AAAT-CAAACTTTTATTTCGAAAT
* *
33510 AGTTAAAAAAAATCAAACA--TTATTTAAAAATTAAACTTTTCATTTAAAATGCCTAAAAAATAG
190 AGTTAAAAAAAATCAAA-ATTTTATTTAAAAATTAAACTTTT-ATTTAAAATGACTAAAAAACAG
33573 ATTTTTAATTTTTAAAAATATAAACTTTCTTTTTAAAA
253 ATTTTTAATTTTT-AAAATATAAACTTTCTTTTTAAAA
** * * * *
33611 AAAATCACTGCTTTAATTAAAAATTCAAAATTTTATTTCGAAATAGTTAAAAAAAAATCAAATTT
1 AAAATCACTAATTTACTTAAAAATCCAAACTTTTATTTTGAAATAGTT--AAAAAAATCAAA-TT
* * *
33676 TTGTTTAAAAATTTAAAGT-TTTTCTTTAAAATGATTAAAAAATATATTTTTATTTTTAAAAATC
63 TTGTTT-AAAATTTAAAATCTTTTCTTTAAAATGACTAAAAAACATATTTTTA-TTTTAAAAATC
* * *
33740 TAAACTTTCTTTTTTTTTTTAATGAAAATCACTACTTTACTTAAAAATTCAAACTTTTATTTCGA
126 TAAAC-TT-TTTTTTTTTTTAAGGAAAATCACTATTTTA-TTTAAAA-TCAAACTTTTATTTCGA
* *
33805 AATAGTT-AAAAAAATCAAAATTTTGTTTAAAAATTTAAACTTTT-TTTTAAATGACTAAAAAAC
187 AATAGTTAAAAAAAATCAAAATTTTATTTAAAAA-TTAAACTTTTATTTAAAATGACTAAAAAAC
* * * *
33868 AGA-TTTTCATTTTT-AAGTCTAAA-TTT-TTTTTAAAG
251 AGATTTTTAATTTTTAAAATATAAACTTTCTTTTTAAAA
* * * *
33903 AAAATTACTATTTTTCTTAAAAATCCAAACTTTTCATTTTGACATAGTT-AAAAAATCAAAGTTT
1 AAAATCACTAATTTACTTAAAAATCCAAACTTTT-ATTTTGAAATAGTTAAAAAAATCAAA-TTT
33967 TGTTTAAAATTTTAAAATCTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTA
64 TGTTTAAAA-TTTAAAATCTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTA
* *
34032 AACTTTTTTTTTTTTTAAGGAAAATCACTATTTTTTTTTTAAAATCAAAACTTTTATTTTGAAAT
128 AACTTTTTTTTTTTTTAAGGAAAATCACTA--TTTTATTTAAAATC-AAACTTTTATTTCGAAAT
**
34097 TCTTAAAAAAAATCAAAACTTTT
190 AGTTAAAAAAAATCAAAA-TTTT
34120 CTCAAGATCA
Statistics
Matches: 433, Mismatches: 49, Indels: 52
0.81 0.09 0.10
Matches are distributed among these distances:
288 26 0.06
289 71 0.16
290 58 0.13
291 67 0.15
292 53 0.12
293 41 0.09
294 14 0.03
295 1 0.00
296 11 0.03
297 31 0.07
298 47 0.11
299 13 0.03
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (289 bp):
AAAATCACTAATTTACTTAAAAATCCAAACTTTTATTTTGAAATAGTTAAAAAAATCAAATTTTG
TTTAAAATTTAAAATCTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAAAC
TTTTTTTTTTTTTAAGGAAAATCACTATTTTATTTAAAATCAAACTTTTATTTCGAAATAGTTAA
AAAAAATCAAAATTTTATTTAAAAATTAAACTTTTATTTAAAATGACTAAAAAACAGATTTTTAA
TTTTTAAAATATAAACTTTCTTTTTAAAA
Found at i:44576 original size:13 final size:12
Alignment explanation
Indices: 44533--44598 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
44523 TAGGTTTTGG
44533 AATTTTTATTTT
1 AATTTTTATTTT
* *
44545 CCATTTTTATTGT
1 -AATTTTTATTTT
*
44558 AGTTTTTAATTTT
1 AATTTTT-ATTTT
*
44571 AATTTTAATTTT
1 AATTTTTATTTT
44583 -ATTTGTTATGTTT
1 AATTT-TTAT-TTT
44596 AAT
1 AAT
44599 AAAGTGGGTC
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
11 4 0.10
12 13 0.32
13 22 0.54
14 2 0.05
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (12 bp):
AATTTTTATTTT
Found at i:54238 original size:35 final size:35
Alignment explanation
Indices: 54171--54238 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
54161 ATTCACAAGT
* * *
54171 ATGGAGGATTCTAAGGGACTAACTATAGTTACAGC
1 ATGGAGGATCCTAAGGGACTAACTACAATTACAGC
54206 ATGGAGGATCCTAAGGGACTAACTACAATTACA
1 ATGGAGGATCCTAAGGGACTAACTACAATTACA
54239 ACATTTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (35 bp):
ATGGAGGATCCTAAGGGACTAACTACAATTACAGC
Found at i:65035 original size:42 final size:42
Alignment explanation
Indices: 64976--65060 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
64966 AATTGCTACC
64976 TAAGATGAAATATCCTCGCAGTTTTACAATTTCATGCTCCAT
1 TAAGATGAAATATCCTCGCAGTTTTACAATTTCATGCTCCAT
65018 TAAGATGAAATATCCTCGCAGTTTTACAATTTCATGCTCCAT
1 TAAGATGAAATATCCTCGCAGTTTTACAATTTCATGCTCCAT
65060 T
1 T
65061 GGAAATCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (42 bp):
TAAGATGAAATATCCTCGCAGTTTTACAATTTCATGCTCCAT
Found at i:97854 original size:23 final size:22
Alignment explanation
Indices: 97819--97880 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
97809 CAATTATACA
*
97819 TTCATGAAGATGTTCGATTAATG
1 TTCATGAACATGTTCGATTAA-G
*
97842 TTCGTGAACATGTTCGATTAAG
1 TTCATGAACATGTTCGATTAAG
*
97864 TTAAATGAACATGTTCG
1 TT-CATGAACATGTTCG
97881 TGAACATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (22 bp):
TTCATGAACATGTTCGATTAAG
Found at i:97890 original size:23 final size:23
Alignment explanation
Indices: 97846--97891 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97836 TTAATGTTCG
* *
97846 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
97869 TGAACATGTTCG-TGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
97892 CAAACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:109159 original size:55 final size:55
Alignment explanation
Indices: 109075--109184 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
109065 GCGGTGACAA
109075 TTTATTTATTATTTACATTGTGGTCACATTTAGTGGTTTGCCGACTTATCAAGTT
1 TTTATTTATTATTTACATTGTGGTCACATTTAGTGGTTTGCCGACTTATCAAGTT
109130 TTTATTTATTATTTACATTGTGGTCACATTTAGTGGTTTGCCGACTTATCAAGTT
1 TTTATTTATTATTTACATTGTGGTCACATTTAGTGGTTTGCCGACTTATCAAGTT
109185 AGGGATCCCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (55 bp):
TTTATTTATTATTTACATTGTGGTCACATTTAGTGGTTTGCCGACTTATCAAGTT
Found at i:121593 original size:17 final size:17
Alignment explanation
Indices: 121561--121674 Score: 102
Period size: 17 Copynumber: 6.6 Consensus size: 17
121551 ACTAAATTCT
* *
121561 AATGACAAATGGAAATGA
1 AATGAC-AATGAAAATGC
*
121579 AATGACAATGCAAATGC
1 AATGACAATGAAAATGC
* *
121596 AATGACAATTAAAATGT
1 AATGACAATGAAAATGC
* ** *
121613 AATGACAACGGGAATGT
1 AATGACAATGAAAATGC
* **
121630 GATGACAATGCTAATGC
1 AATGACAATGAAAATGC
*
121647 AATGACAATTAAAATGC
1 AATGACAATGAAAATGC
121664 AATGACAATGA
1 AATGACAATGA
121675 GAATTTGATG
Statistics
Matches: 77, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
17 71 0.92
18 6 0.08
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.21
Consensus pattern (17 bp):
AATGACAATGAAAATGC
Found at i:121692 original size:51 final size:51
Alignment explanation
Indices: 121580--121692 Score: 181
Period size: 51 Copynumber: 2.2 Consensus size: 51
121570 TGGAAATGAA
* * *
121580 ATGACAATGCAAATGCAATGACAATTAAAATGTAATGACAACGGGAATGTG
1 ATGACAATGCTAATGCAATGACAATTAAAATGCAATGACAACGAGAATGTG
* *
121631 ATGACAATGCTAATGCAATGACAATTAAAATGCAATGACAATGAGAATTTG
1 ATGACAATGCTAATGCAATGACAATTAAAATGCAATGACAACGAGAATGTG
121682 ATGACAATGCT
1 ATGACAATGCT
121693 TACTAACAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.24
Consensus pattern (51 bp):
ATGACAATGCTAATGCAATGACAATTAAAATGCAATGACAACGAGAATGTG
Done.