genome.fa.s2616.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002616.1 Kokia drynarioides strain JFW-HI SEQ_114831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79446

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619--3662	18	2.4	18	96	0	79	36	20	9	34	1.84
3664--3776	30	3.7	30	79	2	127	24	24	23	27	2.00
8261--8310	13	3.8	13	74	10	57	36	4	24	36	1.74
11918--12063	68	2.1	68	89	0	220	31	15	26	27	1.95
29773--29811	21	1.9	21	89	5	62	12	12	7	66	1.43
31964--32005	21	2.0	21	90	0	66	57	14	28	0	1.38
32710--32760	10	5.2	10	80	4	50	80	0	19	0	0.71
32730--32760	16	1.9	16	93	0	53	77	0	22	0	0.77
35330--35574	72	3.4	72	95	0	427	57	14	4	23	1.55
42095--42151	3	19.3	3	96	3	107	31	0	0	68	0.90
42903--42972	17	3.9	17	73	14	61	77	7	0	15	0.98
42918--42971	22	2.5	22	82	8	67	77	7	0	14	0.97
42948--42999	18	2.9	18	80	8	63	76	3	5	13	1.10
46679--46739	31	2.0	30	83	3	77	57	14	1	26	1.47
46802--46983	83	2.3	80	84	9	232	52	7	6	34	1.54
48360--48752	143	2.8	139	84	5	495	29	19	19	31	1.96
48764--48872	36	3.0	36	83	2	137	30	20	16	33	1.94
49163--49209	21	2.2	21	84	0	58	34	27	12	25	1.92
49905--49966	24	2.6	25	87	5	83	29	25	20	24	1.99
49960--50069	27	4.1	27	87	0	148	31	22	17	28	1.96
51839--52146	36	8.4	37	84	6	358	28	25	12	33	1.93
51839--52146	74	4.2	72	83	6	375	28	25	12	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51839--52146	112	2.8	108	83	4	375	28	25	12	33	1.93
52251--52402	76	2.0	76	100	0	304	27	10	14	47	1.77
54253--54443	94	2.0	94	91	0	310	20	8	17	52	1.71
55036--55232	36	5.4	37	88	3	290	29	20	15	34	1.93
54996--55231	36	6.5	36	82	7	255	28	21	14	35	1.93
55213--55251	20	2.0	20	94	0	69	28	33	0	38	1.57
55177--55289	56	2.0	56	89	3	174	25	26	10	37	1.89
55139--55323	94	2.0	94	86	6	259	25	26	12	35	1.92
55234--55338	39	2.8	37	83	8	124	23	27	13	35	1.92
58462--58490	5	5.8	5	100	0	58	20	0	0	79	0.74
59479--59686	78	2.7	78	84	3	258	37	22	16	23	1.93
59479--59724	39	6.3	39	72	10	155	36	21	17	24	1.94
66714--66744	16	1.9	16	100	0	62	38	6	16	38	1.74
69656--69743	12	7.3	12	77	0	68	9	4	18	68	1.34
69658--69696	15	2.6	15	84	12	53	7	5	17	69	1.32
69656--69743	36	2.4	36	84	0	113	9	4	18	68	1.34
69867--69961	49	2.0	47	83	8	120	27	0	8	64	1.22
70297--70413	59	2.0	59	98	0	225	40	11	9	38	1.75
72466--72516	25	2.0	25	92	0	84	49	11	23	15	1.78
74230--74333	48	2.1	48	98	1	199	20	11	33	34	1.88
76299--76361	28	2.2	28	82	2	72	25	7	30	36	1.84
76312--76583	88	3.1	87	79	8	218	32	3	29	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76435--76629	29	6.7	29	86	5	234	33	2	27	36	1.69
76435--76629	57	3.4	58	84	4	243	33	2	27	36	1.69
77070--77108	20	1.9	21	84	5	53	10	25	7	56	1.59

Tables:   1

The End!