Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002624.1 Kokia drynarioides strain JFW-HI SEQ_114848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6363
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32


Found at i:4960 original size:95 final size:92

Alignment explanation


    Indices: 4745--5014  Score: 327
    Period size: 95  Copynumber: 2.9  Consensus size: 92

       4735 CTGTTGATCA

                                            *               *         *      
       4745 TTGTACAGATCTGGGAAATTTAACTCAGATCAAATGATGAATCAAAAACAATCGAATCGAAAATA
          1 TTGTACAGATCTGGGAAATTTAACTCAGATCAGATGATGAAT-AAAAATAATCGAATCAAAAATA

                           *              
       4810 T---AACAAGTAAATTAACGGCACCACATC
         65 TAAGAACAAGTAAATCAAC-G-ACCACATC

                    *                                           *            
       4837 TTGTACAGGTCTGGGAAATTTAACTCAGATCAGATGATAGAATAAAAAATAAGCGAATCAAAAAT
          1 TTGTACAGATCTGGGAAATTTAACTCAGATCAGATGAT-GAAT-AAAAATAATCGAATCAAAAAT

                                     *    
       4902 ATGAAGAACAAGTAAATCAACGACCGCATC
         64 AT-AAGAACAAGTAAATCAACGACCACATC

                          *                               *     *   *     *  
       4932 TTGTACAGATCTGGAAAATTTAACTCAGATCAGATGATG---AAAATTAATCAAATAAAAAACAT
          1 TTGTACAGATCTGGGAAATTTAACTCAGATCAGATGATGAATAAAAATAATCGAATCAAAAATAT

                                 
       4994 AAAGAACAAGTAAATCAACGA
         66 -AAGAACAAGTAAATCAACGA

       5015 TACCGAAACG


Statistics
Matches: 157,  Mismatches: 16, Indels: 12
        0.85            0.09        0.06

Matches are distributed among these distances:
  90   38  0.24
  92   36  0.23
  93   24  0.15
  94    1  0.01
  95   43  0.27
  96    1  0.01
  97   14  0.09

ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22


Consensus pattern (92 bp):   
TTGTACAGATCTGGGAAATTTAACTCAGATCAGATGATGAATAAAAATAATCGAATCAAAAATAT
AAGAACAAGTAAATCAACGACCACATC
Done.