Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002627.1 Kokia drynarioides strain JFW-HI SEQ_114854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1870
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40


Found at i:1651 original size:20 final size:21

Alignment explanation


    Indices: 1616--1655  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1606 TCTATTATCC

                     *           
       1616 AAACCTAATCAAATTCAATTG
          1 AAACCTAATAAAATTCAATTG

                                
       1637 AAACC-AATAAAATTCAATT
          1 AAACCTAATAAAATTCAATT

       1656 TTATTTTTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   13  0.72
  21    5  0.28

ACGTcount: A:0.53, C:0.17, G:0.03, T:0.28


Consensus pattern (21 bp):   
AAACCTAATAAAATTCAATTG
Done.