Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002628.1 Kokia drynarioides strain JFW-HI SEQ_114855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4767
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:3651 original size:17 final size:16

Alignment explanation


    Indices: 3631--3684  Score: 65
    Period size: 17  Copynumber: 3.3  Consensus size: 16

       3621 TCCTTTGCTT

                             
       3631 TTTTTATATTTTATTTA
          1 TTTTTAT-TTTTATTTA

                **           
       3648 TTTTGGTGTTTTATTTA
          1 TTTTTAT-TTTTATTTA

                            
       3665 -TTTTATTTTTATTTA
          1 TTTTTATTTTTATTTA

                 
       3680 TTTTT
          1 TTTTT

       3685 CGTTATTCAC


Statistics
Matches: 31,  Mismatches: 5, Indels: 3
        0.79            0.13        0.08

Matches are distributed among these distances:
  15    9  0.29
  16    8  0.26
  17   14  0.45

ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78


Consensus pattern (16 bp):   
TTTTTATTTTTATTTA
Done.