Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002633.1 Kokia drynarioides strain JFW-HI SEQ_114861, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35


Found at i:543 original size:19 final size:19

Alignment explanation


    Indices: 515--560  Score: 83
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        505 GTTGTTAATT

                 *             
        515 GGTGGTAAAATATGAGTTA
          1 GGTGGCAAAATATGAGTTA

                               
        534 GGTGGCAAAATATGAGTTA
          1 GGTGGCAAAATATGAGTTA

                    
        553 GGTGGCAA
          1 GGTGGCAA

        561 TTTCCTCCAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  19   26  1.00

ACGTcount: A:0.35, C:0.04, G:0.35, T:0.26


Consensus pattern (19 bp):   
GGTGGCAAAATATGAGTTA
Done.