Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002638.1 Kokia drynarioides strain JFW-HI SEQ_114868, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:887 original size:2 final size:2

Alignment explanation


    Indices: 880--939  Score: 57
    Period size: 2  Copynumber: 30.0  Consensus size: 2

        870 CGAAATAAAA

                        *      *              *  *                        
        880 AT AT AT AT GT AT AC AT AT AT AT AC AC AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

               *     *      *         
        922 AT GT AT GT AT AC AT AT AT
          1 AT AT AT AT AT AT AT AT AT

        940 GAGATAATAT


Statistics
Matches: 46,  Mismatches: 12, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   2   46  1.00

ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43


Consensus pattern (2 bp):   
AT

Done.