Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000264.1 Kokia drynarioides strain JFW-HI SEQ_111007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1315
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43


Found at i:1223 original size:12 final size:12

Alignment explanation


    Indices: 1206--1230  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1196 TTGTTATTAT

                        
       1206 TTTATTTGTTTA
          1 TTTATTTGTTTA

                        
       1218 TTTATTTGTTTA
          1 TTTATTTGTTTA

             
       1230 T
          1 T

       1231 CATTAAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76


Consensus pattern (12 bp):   
TTTATTTGTTTA
Done.