Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002641.1 Kokia drynarioides strain JFW-HI SEQ_114873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6113
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:2623 original size:29 final size:29

Alignment explanation


    Indices: 2589--2649  Score: 113
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2579 AACAAAATTA

                                         
       2589 TGCAATCGATAACACGCCTCGGTACTAAG
          1 TGCAATCGATAACACGCCTCGGTACTAAG

                             *           
       2618 TGCAATCGATAACACGCTTCGGTACTAAG
          1 TGCAATCGATAACACGCCTCGGTACTAAG

               
       2647 TGC
          1 TGC

       2650 CTAGCCCGTA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23


Consensus pattern (29 bp):   
TGCAATCGATAACACGCCTCGGTACTAAG
Done.