Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002644.1 Kokia drynarioides strain JFW-HI SEQ_114878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35


Found at i:813 original size:28 final size:28

Alignment explanation


    Indices: 782--835  Score: 90
    Period size: 28  Copynumber: 1.9  Consensus size: 28

        772 AGAATTCTTA

                          *             
        782 TTAAAAAGAGGATCGAAGGAAACAATAT
          1 TTAAAAAGAGGATCAAAGGAAACAATAT

                  *                   
        810 TTAAAAGGAGGATCAAAGGAAACAAT
          1 TTAAAAAGAGGATCAAAGGAAACAAT

        836 CATTAATTGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   24  1.00

ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17


Consensus pattern (28 bp):   
TTAAAAAGAGGATCAAAGGAAACAATAT

Found at i:841 original size:28 final size:27

Alignment explanation


    Indices: 780--841  Score: 88
    Period size: 28  Copynumber: 2.2  Consensus size: 27

        770 CAAGAATTCT

                            *          
        780 TATTAAAAAGAGGATCGAAGGAAACAA
          1 TATTAAAAAGAGGATCAAAGGAAACAA

                     *                  
        807 TATTTAAAAGGAGGATCAAAGGAAACAA
          1 TA-TTAAAAAGAGGATCAAAGGAAACAA

                   
        835 TCATTAA
          1 T-ATTAA

        842 TTGAAGATTG


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  27    2  0.06
  28   28  0.90
  29    1  0.03

ACGTcount: A:0.53, C:0.08, G:0.19, T:0.19


Consensus pattern (27 bp):   
TATTAAAAAGAGGATCAAAGGAAACAA
Done.