Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002649.1 Kokia drynarioides strain JFW-HI SEQ_114887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1991
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Found at i:956 original size:17 final size:18

Alignment explanation


    Indices: 934--972  Score: 53
    Period size: 17  Copynumber: 2.2  Consensus size: 18

        924 TTTAATTTTA

                    *         
        934 TTTTTTAATATT-TAAAT
          1 TTTTTTAAAATTATAAAT

                           *  
        951 TTTTTTAAAATTATATAT
          1 TTTTTTAAAATTATAAAT

                
        969 TTTT
          1 TTTT

        973 AATTTTTTAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17   11  0.58
  18    8  0.42

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (18 bp):   
TTTTTTAAAATTATAAAT
Done.