Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000265.1 Kokia drynarioides strain JFW-HI SEQ_111009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1667
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33


Found at i:1264 original size:16 final size:17

Alignment explanation


    Indices: 1229--1271  Score: 52
    Period size: 16  Copynumber: 2.6  Consensus size: 17

       1219 AACTATGAAA

                          *  
       1229 ACAAATAAAATGCAGGG
          1 ACAAATAAAATGCAAGG

                           * 
       1246 ACAAA-AAAATGCAATG
          1 ACAAATAAAATGCAAGG

                *     
       1262 ACAATTAAAA
          1 ACAAATAAAA

       1272 GAAATGCATG


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  16   13  0.59
  17    9  0.41

ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14


Consensus pattern (17 bp):   
ACAAATAAAATGCAAGG
Done.