Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002653.1 Kokia drynarioides strain JFW-HI SEQ_114891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7076
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34


Found at i:1231 original size:36 final size:36

Alignment explanation


    Indices: 1184--1258  Score: 132
    Period size: 36  Copynumber: 2.1  Consensus size: 36

       1174 GATATCTTCG

                                                
       1184 TAACATAGACACATGAAAGACATTATGAATCCTGTC
          1 TAACATAGACACATGAAAGACATTATGAATCCTGTC

                           *  *                 
       1220 TAACATAGACACATGGAATACATTATGAATCCTGTC
          1 TAACATAGACACATGAAAGACATTATGAATCCTGTC

               
       1256 TAA
          1 TAA

       1259 TTCTGGAGGG


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27


Consensus pattern (36 bp):   
TAACATAGACACATGAAAGACATTATGAATCCTGTC

Found at i:6394 original size:25 final size:25

Alignment explanation


    Indices: 6317--6400  Score: 95
    Period size: 23  Copynumber: 3.5  Consensus size: 25

       6307 AAGTGCTGGG

                                     
       6317 TAACAGAGAGCACACACAGTGCT-A
          1 TAACAGAGAGCACACACAGTGCTAA

                      * *   *   *    
       6341 -AACAGAGAGTATACAAAGTACTAA
          1 TAACAGAGAGCACACACAGTGCTAA

                          *          
       6365 T--CAGAGAGCACATACAGTGCTAA
          1 TAACAGAGAGCACACACAGTGCTAA

                         
       6388 TAACAGAGAGCAC
          1 TAACAGAGAGCAC

       6401 GAGATGTGCT


Statistics
Matches: 47,  Mismatches: 9, Indels: 7
        0.75            0.14        0.11

Matches are distributed among these distances:
  23   36  0.77
  24    1  0.02
  25   10  0.21

ACGTcount: A:0.45, C:0.20, G:0.20, T:0.14


Consensus pattern (25 bp):   
TAACAGAGAGCACACACAGTGCTAA
Done.