genome.fa.s2659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002659.1 Kokia drynarioides strain JFW-HI SEQ_114908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36389

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552--2619	33	2.1	33	97	0	127	17	10	17	54	1.70
4263--4308	24	1.9	24	86	8	67	47	0	0	52	1.00
4408--4503	42	2.3	42	98	0	183	29	14	34	21	1.93
10969--11248	30	9.5	29	72	13	153	36	22	3	37	1.70
10986--11284	29	10.2	29	73	12	209	35	24	3	37	1.71
10986--11248	59	4.5	58	79	5	228	36	23	2	37	1.69
10986--11283	59	5.1	59	75	12	222	35	23	3	37	1.71
11148--11373	29	7.8	29	69	14	119	34	26	4	33	1.78
11148--11373	87	2.6	88	77	15	204	34	26	4	33	1.78
15201--15260	23	2.6	23	82	10	61	23	21	8	46	1.78
19505--19711	20	10.4	20	81	0	243	36	29	15	18	1.92
19489--19699	40	5.3	40	86	2	280	35	30	15	18	1.92
21907--21941	8	4.2	8	85	7	52	51	0	0	48	1.00
21898--21955	25	2.3	24	73	23	57	50	0	0	50	1.00
21909--21945	17	2.2	17	95	0	65	48	0	0	51	1.00
23960--24003	20	2.2	20	88	4	63	36	0	6	56	1.26
25034--25136	35	2.9	35	75	10	104	46	1	1	49	1.24
25146--25194	3	16.3	3	100	0	98	32	0	0	67	0.91
26994--27145	58	2.6	60	83	3	193	35	23	1	39	1.63
27014--27162	30	5.1	30	82	8	164	34	26	0	38	1.62
27032--27230	30	6.9	29	78	13	137	34	27	1	37	1.64
27044--27262	30	7.5	30	76	12	124	35	24	1	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30856--30891	19	1.9	19	88	5	56	44	0	8	47	1.33
34006--34037	8	4.0	8	95	0	55	40	50	9	0	1.35
34619--34647	13	2.1	14	93	6	51	41	0	10	48	1.37
34796--34880	32	2.7	32	84	0	107	22	9	12	55	1.66

Tables:   1

The End!