Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000267.1 Kokia drynarioides strain JFW-HI SEQ_111011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5572
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:2819 original size:20 final size:20

Alignment explanation


    Indices: 2796--2882  Score: 54
    Period size: 20  Copynumber: 4.3  Consensus size: 20

       2786 TATAAAAATA

                                
       2796 GGTAAATCTATAGAAATATT
          1 GGTAAATCTATAGAAATATT

                 * *    *       
       2816 GGTAAGTTTATATAAAT-TT
          1 GGTAAATCTATAGAAATATT

             *               *    
       2835 GATAAAAT-TATTAGAACTATT
          1 GGT-AAATCTA-TAGAAATATT

                  *         * *  
       2856 GGT-AAGCTCATAGAAGTTTT
          1 GGTAAATCT-ATAGAAATATT

                   
       2876 GGTAAAT
          1 GGTAAAT

       2883 AGTTAAAAAT


Statistics
Matches: 49,  Mismatches: 12, Indels: 11
        0.68            0.17        0.15

Matches are distributed among these distances:
  19    8  0.16
  20   34  0.69
  21    7  0.14

ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38


Consensus pattern (20 bp):   
GGTAAATCTATAGAAATATT
Done.