Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002679.1 Kokia drynarioides strain JFW-HI SEQ_114944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:235 original size:4 final size:4

Alignment explanation


    Indices: 228--254  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

        218 AATTTATTTC

                                             
        228 AATT AATT AATT AATT AATT AATT AAT
          1 AATT AATT AATT AATT AATT AATT AAT

        255 ATTTTAGGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (4 bp):   
AATT

Done.