Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002702.1 Kokia drynarioides strain JFW-HI SEQ_114984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12289
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Found at i:976 original size:280 final size:280
Alignment explanation
Indices: 9--2995 Score: 3079
Period size: 281 Copynumber: 10.6 Consensus size: 280
1 AGTAAAAG
* * *
9 AAATATTATTTTAGCTTAAAATT-TAAGAATAGTCCTTGTACTTCTTGATTTGCGCAGATTTGGT
1 AAATATTATTTTAGGTT-AAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGT
* * * *
73 CCCTCATTTTTTTATTTACTCGTAGCATTGAAATTGGCCTCTTAAGTTTGACAAAAAAACAAAAT
65 CCCTC-TATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGA-GAAAAAACAAAAT
* * *
138 AGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAATCAGCTCCA-TCACATGCATTTA-ACTT
128 TGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCT-CAGTCACATGCAATTATA-TT
* * * ** ** *
201 GAAACTGCCCCGTAAGATGGCAGTTTTAAAGTAAAAGAGAAAATATT-TTTTTTATATCTGGAAT
191 GAAACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAAC
* * * * **
265 GCCGCATGTCAGAATCCAAAGAAAC
256 GTCGCGTGTCAGAGTCGAGTGAAAC
* * * * **
290 AAATATTACTTTAGCTTAAATTTTAAAAATAGTCCTTGTAC-TAGTTGATTTGTTCGGATTTGGT
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTA-TTGATTTGCGCGGATTTGGT
* * * *
354 -CCTACTATTTTTATTTACTCTTAGCATTCAAATTGGCATCTTAACTATGAGAAAAAAAAAAAAA
65 CCCT-CTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG-------AAAAAA
* * * * *
418 GAAAATTGATGAAATCAATGAAGAATCTCCCTACCAAATACAAGCAACTC-GATCACATGCATTT
122 CAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAG-TCACATGCAATT
* * * * *
482 A-ACTTGAAACCGCTGCGTAAGATAGCAGTTTTAAAATAAAAGAGAA---ACTATTTTTTATATC
186 ATA-TTGAAACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATC
* * * **
543 AAGAACGTCGCGTGTCACAATCCAAAGAAAC
250 AAGAACGTCGCGTGTCAGAGTCGAGTGAAAC
* * * * *
574 AAATATTATTTTTTAGCTTAAATTTTAAGAATAGCCCTTGTACTTGTTGATTTGTGCGGATTTGG
1 AAATATTA--TTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGG
* * * * *
639 TCCCACTATTTTTATTTACTCATAGCATTCAAATTGGCATCTTAACTTTGAAGAAAAAAGAAAAT
64 TCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTG-AGAAAAAACAAAAT
* * * * *
704 TGATGAAATCAACGAAGAATCTCCCTACCAAATACAAGCAGTTCAATCACATGAAATTATATTGA
128 TGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGA
* * * ** * *
769 AA-TGACCGTGTTAGATGGTAGTTTTAGGATAAAAAAGAATTTATTATTTTTTATATTAAAAACG
193 AACTG-CCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACG
* *
833 TCGCGTGACAGAGTTGAGTGAAAC
257 TCGCGTGTCAGAGTCGAGTGAAAC
* * **
857 AAATATTATTTTAGGTTTAATTCTAAGAATAGTCCTTGTACTTCTTGATTTGCGCATATTTGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * * *
922 CCTCGATTTTTATTTACTCGTAGCATTGAAATTGGCCTCTTAAGTTTGAGAAAAACAACAAAATA
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG-AAAA-AACAAAATT
* * *
987 GATTAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGCTCCGTCACATGCAATTACT-TTGA
129 GATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTA-TATTGA
* * * * *
1051 AA-TCGCCGCGTAAAAAGGCAATTTTAAAATACAAAAAGAA---AATATTTTTTATATCAAGAAT
193 AACT-GCCGCGTAAGATGGCAGTTTTAAAATA-AAAAAGAATTTATTATTTTTTATATCAAGAAC
* * * *
1112 GGCACGTGTTAGAGTCTAGTGAAAC
256 GTCGCGTGTCAGAGTCGAGTGAAAC
* * * * * * * *
1137 AAATATTACTTCAGGTTAAAATCTAATAATAGTCCTTGTATTTATTGATTTGCACAGATTCGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * ** * * *
1202 CCTTTATTTTTAATTACTCACAGCTTTCAAATTGGCGTCTTAACTTTGAGAAAAAAAGAAAATTG
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG-AAAAAACAAAATTG
* * *
1267 ATGAAATCAACGAAGAATCTCCCTGTCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAAA
130 ATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAAA
* * * * * * * * * *
1332 TTGTCACATTAGATGGCATTTTTAAGAT-AAAAAGAATTTATTATTTTTTATATTAAAAACGCCG
195 CTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGTCG
1396 CGTGTCAGAGTCGAGTGAAAC
260 CGTGTCAGAGTCGAGTGAAAC
* * *
1417 AAATATTATTTTAGATTAAATTCTAAGAATAGTCCTTTTACTTATTGATTTGGGCGGATTTGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
**
1482 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAATAAACAATGTT
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG-AAA-AAACAAAATT
* * * * * * * *
1547 GATGAAATCGACGAAGAATCTCCTTGCCAAGTACAAGTAGCTCAGTCACACGCAATTGTCTT-AA
129 GATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAA
* * * * * *
1611 AATCGCCGCGTAAGATAGCAGTCTTAAGATAAAAAAGAATTTATTATTTCTTATATCAAGAACGC
194 ACT-GCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGT
* *
1676 CACGTTTCAGAGTCGAGTGAAAC
258 CGCGTGTCAGAGTCGAGTGAAAC
* * * * * *
1699 AATTATTATTTTAGGTTAAA-TCTGAGAATAGTCCTTGTACTTCTTGATCTGCACAGATTTGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * * * *
1763 CCTCTATTTTTATTTACTCGTTGCAATGAAATTGGCCTCTTAAGTTTGAGAAAAAAACAAAATAG
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG-AAAAAACAAAATTG
* * * * *
1828 AGGAAATCTAAGAAGAATCTCCCTGCTAAATACAAGTAGCTCAGTCACATGCAATTATCTTGAAA
130 ATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAAA
* * *** * *
1893 CCGTCGCGTAAGATGTTTGTTTTAAAATAAAAAAGAAATTA-T-TTTTTTATATCAAGAACGCCG
195 CTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGTCG
* * * *
1956 CGCGTCAGAGTTGAGAGAGA-
260 CGTGTCAGAGTCGAGTGAAAC
* * *
1976 AAATATTATTTTAGGTTAAATTCTTAGAATAGTCCTCGTACTTATTGATTTGCACGGATTTGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * *
2041 CCTCTTTTTTTAATTACTCGTAGCATTCAAATTGGCGTATTAAGTTTGAG--AAAA-AAAATTGA
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAACAAAATTGA
* * * * *
2103 TGAAATCAACGAAGAATCTTCCTGCTAAATACAAGCAGCTCAATTACATGCAATTATATTGAAAC
131 TGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAAAC
** * * * * * * * * *
2168 TATCGCATTAGATGACAATTTTAAGATAAAAAAGAATTTATTAGTTTTTATATTAAAAACGTTGC
196 TGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGTCGC
* *
2233 ATGTCAAAGTCGAGTGAAAC
261 GTGTCAGAGTCGAGTGAAAC
* * *
2253 AAATATTATTTTACGTTAAATTCTAAAAATAGTCCTTTTACTTATTGATTTGCGCGGATTTGGTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * * * *
2318 CCTTTATTTTTATTTACTCATAGCATTCAAATTGGGGTCTTAAGTTTGAGAAAAAAAAATAATCG
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAACAA-AATTG
* * * * * * *
2383 ATGAAA-CGAAAGAAGAATCTCCCTACCAAATACATGTAGTTCAGTCACTTGCAATTATCTTAAA
130 ATGAAATC-AAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAA
** * * *
2447 ACTGTTGCGTAAGATAGCAATTTTAAAATTAAAAA-AA-TTA-TATTTTTTATATCAAGAACGTC
194 ACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGTC
* *
2509 GTGTGTCAGAGTCGAGTGGAAC
259 GCGTGTCAGAGTCGAGTGAAAC
* * *
2531 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTAATTATTGATTTGCACGGATTTGAG-
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTG-GT
* * *
2595 CCCTCTATTTTTATTTACTTGTAGCATTCAAATTGGCTTCTTAAATTTGAGAAAAAAAAAACAAA
65 CCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAG----AAAAAACAAA
* * * * * *
2660 ATCGATGAAATCAAAGAAGAATCTCCTTGCGAAATACTAGCAGCTCAGTCACATGCAAATATCTT
126 ATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATT
* * * * * * * * *
2725 GAAACAGTCGCATTAGATGACAATTTTAAAATAAAAAAGAAATTATTATTTTTTTATATAAAAAA
191 GAAACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTA-TTTTTTATATCAAGAA
* * *
2790 CGTTGCGTGTCAGAAT-TATGTGAAAC
255 CGTCGCGTGTCAGAGTCGA-GTGAAAC
* * * * * **
2816 AAATATTATTTTAGGTTAAATTTTAATAATAATCCTTGTACTTATTAATTTGCGCGAATTTCCTC
1 AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
* * * * * *
2881 TCTCTATTTTTATTTACTTGTAGCACTCAAATGGGCGTCTTAAGTTTGAGAAAAAAAAAAATCGA
66 CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAACAAAATTGA
* * * *
2946 T-AAACTCAAAGAAGATTCTCCCTGGCAAAGACAAGTAGCTCAGTCACATG
131 TGAAA-TCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATG
2996 GAATAATCAA
Statistics
Matches: 2273, Mismatches: 373, Indels: 120
0.82 0.13 0.04
Matches are distributed among these distances:
274 94 0.04
275 5 0.00
276 30 0.01
277 130 0.06
278 254 0.11
279 94 0.04
280 528 0.23
281 537 0.24
282 163 0.07
283 59 0.03
284 47 0.02
285 133 0.06
286 194 0.09
287 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (280 bp):
AAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTATTGATTTGCGCGGATTTGGTC
CCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAACAAAATTGA
TGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTCACATGCAATTATATTGAAAC
TGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAATTTATTATTTTTTATATCAAGAACGTCGC
GTGTCAGAGTCGAGTGAAAC
Found at i:1317 original size:561 final size:557
Alignment explanation
Indices: 9--2995 Score: 3050
Period size: 561 Copynumber: 5.3 Consensus size: 557
1 AGTAAAAG
* * *
9 AAATATTATTTTAGCTTAAAATTTAAGAATAGTCCTTGTACTTCTTGATTTGCGCAGATTTGGTC
1 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGGTC
* * * * *
74 CCTCATTTTTTTATTTACTCGTAGCATTGAAATTGGCCTCTTAAGTTTGACAAAAAAACAAAATA
66 CCTC-TATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAA-AAAATA
*
139 GATGAAATCAAAGAAGAATCTCCCTGCCAAATACAA-TCAGCTCCA-TCACATGCATTTA-ACTT
129 GATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGT-AGCT-CAGTCACATGCAATTATA-TT
* * * * *
201 GAAACTGCCCCGTAAGATGGCAGTTTTAAAGTAAAAGAGAAAATATT-TTTTTTATATCT-GGAA
191 GAAACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATAT-TAAGAA
* * * * ** * * * *
264 TGCCGCATGTCAGAATCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAAAATAGTCCTTGT
255 CGCCGCGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGT
** * *
329 AC-TAGTTGATTTGTTCGGATTTGGT-CCTACTATTTTTATTTACTCTTAGCATTCAAATTGGCA
320 ACTTA-TTGATTTGCACGGATTTGGTCCCT-CTATTTTTATTTACTCGTAGCATTCAAATTGGCG
* * * * *
392 TCTTAACTATGAGAAAAAAAAAAAAAGAAAATTGATGAAATCAATGAAGAATCTCCCTACCAAAT
383 TCTTAAGTTTGAG------AAAAAAACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAAT
* * * * *
457 ACAAGCAA-CTC-GATCACATGCATTTAACTTGAAACCGCTGCGTAAGATA-GCAGTTTTAAAAT
442 ACAAG-AAGCTCAG-TCACATGCAATTATCTTGAAA-CGCCGCGTAA-AAAGGCAATTTTAAAAT
* * * * * * * **
519 AAAAGAGAAACTATTTTTTATATCAAGAACGTCGCGTGTCACAATCCAAAGAAAC
503 AAAAAAGAAAATATTTTTTATATCAAGAACGGCACGTGTCAGAGTCGAGTGAAAC
* * * * * * *
574 AAATATTATTTTTTAGCTTAAATTTTAAGAATAGCCCTTGTACTTGTTGATTTGTGCGGATTTGG
1 AAATATTA--TTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGG
* * * *
639 TCCCACTATTTTTATTTACTCATAGCATTCAAATTGGCATCTTAACTTTGAAGAAAAAAGAAAAT
64 TCCCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTG-AGAAAAAAAAAAAT
* * * * * * *
704 TGATGAAATCAACGAAGAATCTCCCTACCAAATACAAGCAGTTCAATCACATGAAATTATATTGA
128 AGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATGCAATTATATTGA
* * * ** * *
769 AA-TGACCGTGTTAGATGGTAGTTTTAGGATAAAAAAGAATTTATTATTTTTTATATTAAAAACG
193 AACTG-CCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATATTAAGAACG
* * * *
833 TCGCGTGACAGAGTTGAGTGAAACAAATATTATTTTAGGTTTAATTCTAAGAATAGTCCTTGTAC
257 CCGCGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTAC
* * ** * * *
898 TTCTTGATTTGCGCATATTTGGTCCCTCGATTTTTATTTACTCGTAGCATTGAAATTGGCCTCTT
322 TTATTGATTTGCACGGATTTGGTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTT
* *
963 AAGTTTGAGAAAAACAACAAAATAGATTAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGC
387 AAGTTTGAGAAAAA-AACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGC
*
1028 TCCGTCACATGCAATTA-CTTTGAAATCGCCGCGTAAAAAGGCAATTTTAAAATACAAAAAGAAA
451 TCAGTCACATGCAATTATC-TTGAAA-CGCCGCGTAAAAAGGCAATTTTAAAATA-AAAAAGAAA
* * *
1092 ATATTTTTTATATCAAGAATGGCACGTGTTAGAGTCTAGTGAAAC
513 ATATTTTTTATATCAAGAACGGCACGTGTCAGAGTCGAGTGAAAC
* * * * * *
1137 AAATATTACTTCAGGTTAAAATCTAATAATAGTCCTTGTATTTATTGATTTGCACAGATTCGGTC
1 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGGTC
* * * * * *
1202 CCTTTATTTTTAATTACTCACAGCTTTCAAATTGGCGTCTTAACTTTGAGAAAAAAAGAAAATTG
66 CCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAA-AAAATAG
* *
1267 ATGAAATCAACGAAGAATCTCCCTGTCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAAA
130 ATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAAA
* * * * * * * * *
1332 TTGTCACATTAGATGGCATTTTTAAGAT-AAAAAGAATTTATTATTTTTTATATTAAAAACGCCG
195 CTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATATTAAGAACGCCG
* *
1396 CGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGATTAAATTCTAAGAATAGTCCTTTTACTTA
260 CGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTA
**
1461 TTGATTTGGGCGGATTTGGTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAG
325 TTGATTTGCACGGATTTGGTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAG
** * * * * *
1526 TTTGAGAAAATAAACAATGTTGATGAAATCGACGAAGAATCTCCTTGCCAAGTACAAGTAGCTCA
390 TTTGAGAAAA-AAACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGCTCA
* * * * * * * *
1591 GTCACACGCAATTGTCTTAAAATCGCCGCGTAAGATA-GCAGTCTTAAGATAAAAAAGAATTTAT
454 GTCACATGCAATTATCTTGAAA-CGCCGCGTAA-AAAGGCAATTTTAAAATAAAAAAGAA---AA
* * *
1655 TATTTCTTATATCAAGAACGCCACGTTTCAGAGTCGAGTGAAAC
514 TATTTTTTATATCAAGAACGGCACGTGTCAGAGTCGAGTGAAAC
* * * * *
1699 AATTATTATTTTAGGTT-AAATCTGAGAATAGTCCTTGTACTTCTTGATCTGCACAGATTTGGTC
1 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGGTC
* * * * *
1763 CCTCTATTTTTATTTACTCGTTGCAATGAAATTGGCCTCTTAAGTTTGAGAAAAAAACAAAATAG
66 CCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAA-AAAATAG
* * * *
1828 AGGAAATCTAAGAAGAATCTCCCTGCTAAATACAAGTAGCTCAGTCACATGCAATTATCTTGAAA
130 ATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAAA
* * *** *
1893 CCGTCGCGTAAGATGTTTGTTTTAAAATAAAAAAGAAATTA-T-TTTTTTATATCAAGAACGCCG
195 CTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATATTAAGAACGCCG
* * * * * *
1956 CGCGTCAGAGTTGAGAGAGA-AAATATTATTTTAGGTTAAATTCTTAGAATAGTCCTCGTACTTA
260 CGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTA
* * *
2020 TTGATTTGCACGGATTTGGTCCCTCTTTTTTTAATTACTCGTAGCATTCAAATTGGCGTATTAAG
325 TTGATTTGCACGGATTTGGTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAG
* * * * *
2085 TTTGAG---AAAA-AAAATTGATGAAATCAACGAAGAATCTTCCTGCTAAATACAAGCAGCTCAA
390 TTTGAGAAAAAAACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGCTCAG
* * ** * * * * * * *
2146 TTACATGCAATTATATTGAAACTATCGCATTAGATGACAATTTTAAGATAAAAAAGAATTTATTA
455 TCACATGCAATTATCTTGAAAC-GCCGCGTAAAAAGGCAATTTTAAAATAAAAAAGAA---AATA
* * * *
2211 GTTTTTATATTAAAAACGTTGCA--TGTCAAAGTCGAGTGAAAC
516 TTTTTTATATCAAGAACG--GCACGTGTCAGAGTCGAGTGAAAC
* * * * *
2253 AAATATTATTTTACGTTAAATTCTAAAAATAGTCCTTTTACTTATTGATTTGCGCGGATTTGGTC
1 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGGTC
* * *
2318 CCTTTATTTTTATTTACTCATAGCATTCAAATTGGGGTCTTAAGTTTGAGAAAAAAAAATAATCG
66 CCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAAAA-AATAG
* * * * * *
2383 ATGAAA-CGAAAGAAGAATCTCCCTACCAAATACATGTAGTTCAGTCACTTGCAATTATCTTAAA
130 ATGAAATC-AAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAA
** * * * * *
2447 ACTGTTGCGTAAGATAGCAATTTTAAAAT-TAAAA-AAATTA-TATTTTTTATATCAAGAACGTC
194 ACTGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATATTAAGAACGCC
* * * *
2509 GTGTGTCAGAGTCGAGTGGAACAAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTAATT
259 GCGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTT
* *
2574 ATTGATTTGCACGGATTTGAG-CCCTCTATTTTTATTTACTTGTAGCATTCAAATTGGCTTCTTA
324 ATTGATTTGCACGGATTTG-GTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTA
* * * * * *
2638 AATTTGAGAAAAAAAAAACAAAATCGATGAAATCAAAGAAGAATCTCCTTGCGAAATACTAGCAG
388 AGTTTGAG---AAAAAAACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAG
* * * * * * *
2703 CTCAGTCACATGCAAATATCTTGAAACAGTCGCATTAGATGACAATTTTAAAATAAAAAAGAAAT
450 CTCAGTCACATGCAATTATCTTGAAAC-GCCGCGTAAAAAGGCAATTTTAAAATAAAAAAGAAA-
* * *** * *
2768 TATTATTTTTTTATATAAAAAACGTTGCGTGTCAGAAT-TATGTGAAAC
513 -A-TA-TTTTTTATATCAAGAACGGCACGTGTCAGAGTCGA-GTGAAAC
* * * * * **
2816 AAATATTATTTTAGGTTAAATTTTAATAATAATCCTTGTACTTATTAATTTGCGC-GAATTTCCT
1 AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAG-ATTTGGT
* ** * * *
2880 CTCTCTATTTTTATTTACTTGTAGCACTCAAATGGGCGTCTTAAGTTTGAGAAAAAAAAAAATCG
65 CCCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAAAAAATAG
* * *
2945 AT-AAACTCAAAGAAGATTCTCCCTGGCAAAGACAAGTAGCTCAGTCACATG
130 ATGAAA-TCAAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATG
2996 GAATAATCAA
Statistics
Matches: 2042, Mismatches: 327, Indels: 109
0.82 0.13 0.04
Matches are distributed among these distances:
553 8 0.00
554 176 0.09
555 275 0.13
556 4 0.00
559 115 0.06
560 288 0.14
561 363 0.18
562 293 0.14
563 190 0.09
565 12 0.01
566 129 0.06
567 185 0.09
568 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (557 bp):
AAATATTATTTTAGGTTAAAATCTAAGAATAGTCCTTGTACTTATTGATTTGCGCAGATTTGGTC
CCTCTATTTTTATTTACTCATAGCATTCAAATTGGCGTCTTAAGTTTGAGAAAAAAAAAAATAGA
TGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGTAGCTCAGTCACATGCAATTATATTGAAAC
TGCCGCGTAAGATGGCAGTTTTAAAATAAAAAAGAAATTATTATTTTTTATATTAAGAACGCCGC
GTGTCAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTCCTTGTACTTAT
TGATTTGCACGGATTTGGTCCCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCGTCTTAAGT
TTGAGAAAAAAACAAAATTGATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGAAGCTCAGT
CACATGCAATTATCTTGAAACGCCGCGTAAAAAGGCAATTTTAAAATAAAAAAGAAAATATTTTT
TATATCAAGAACGGCACGTGTCAGAGTCGAGTGAAAC
Found at i:4950 original size:6 final size:6
Alignment explanation
Indices: 4939--5003 Score: 55
Period size: 6 Copynumber: 11.2 Consensus size: 6
4929 TCAAATTTAT
** **
4939 TTTAAA TTTAAA TTTATCT TTTAAA TTTAAA TTT-GC TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
4986 TTT-AA TTAAAA TTTAAA T
1 TTTAAA TTTAAA TTTAAA T
5004 GGATTTAAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
5 12 0.26
6 30 0.65
7 4 0.09
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:4953 original size:17 final size:17
Alignment explanation
Indices: 4931--5003 Score: 85
Period size: 17 Copynumber: 4.2 Consensus size: 17
4921 AAATTGATTC
4931 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATTT
4948 AAATTTATCTTTTAAATTT
1 AAATTTA--TTTTAAATTT
**
4967 AAATTTGCTTTAAATTT
1 AAATTTATTTTAAATTT
* *
4984 -AATTTAATTAAAATTT
1 AAATTTATTTTAAATTT
5000 AAAT
1 AAAT
5004 GGATTTAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
16 13 0.27
17 19 0.40
19 16 0.33
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.53
Consensus pattern (17 bp):
AAATTTATTTTAAATTT
Found at i:4962 original size:19 final size:19
Alignment explanation
Indices: 4938--4989 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
4928 TTCAAATTTA
*
4938 TTTTAAATTTAAATTTATC
1 TTTTAAATTTAAATTTAGC
4957 TTTTAAATTTAAATTT-GC
1 TTTTAAATTTAAATTTAGC
4975 -TTTAAATTT-AATTTA
1 TTTTAAATTTAAATTTA
4990 ATTAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 5 0.16
17 9 0.29
18 1 0.03
19 16 0.52
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTAAATTTAAATTTAGC
Found at i:4989 original size:11 final size:11
Alignment explanation
Indices: 4918--5003 Score: 50
Period size: 11 Copynumber: 7.6 Consensus size: 11
4908 TTTTAATGGG
*
4918 TTTAAA-TTGA
1 TTTAAATTTAA
* *
4928 TTCAAATTTAT
1 TTTAAATTTAA
4939 TTTAAATTTAAA
1 TTTAAATTT-AA
**
4951 TTTATCTTTTAAA
1 TTTA-AATTT-AA
**
4964 TTTAAATTTGC
1 TTTAAATTTAA
4975 TTTAAATTTAA
1 TTTAAATTTAA
*
4986 TTT-AATTAAAA
1 TTTAAATT-TAA
4997 TTTAAAT
1 TTTAAAT
5004 GGATTTAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
10 9 0.16
11 27 0.47
12 11 0.19
13 10 0.18
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:5753 original size:16 final size:16
Alignment explanation
Indices: 5732--5795 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
5722 ATAAGTAACA
*
5732 TTAATAGTAATAATAG
1 TTAATAATAATAATAG
*
5748 TTAATAATAATAATAA
1 TTAATAATAATAATAG
* *
5764 CTATTTAATAAATAATA-
1 TTA-ATAAT-AATAATAG
*
5781 TTAATATTAATAATA
1 TTAATAATAATAATA
5796 AATAGTATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
15 7 0.18
16 19 0.49
17 6 0.15
18 7 0.18
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (16 bp):
TTAATAATAATAATAG
Found at i:5755 original size:3 final size:3
Alignment explanation
Indices: 5733--5843 Score: 62
Period size: 3 Copynumber: 35.0 Consensus size: 3
5723 TAAGTAACAT
* * * *
5733 TAA TAG TAA TAA TAGT TAA TAA TAA TAA TAA CTATT TAA TAAA TAA TAT
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA -TA-A TAA T-AA TAA TAA
* * * * * *
5782 TAA TAT TAA TAA TAAA TAG TAT TAA TAAA TAT TAA TAA AAA TAT TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
5829 TAA TAA -AA TGAA TAA
1 TAA TAA TAA T-AA TAA
5844 AAAAGTGAAA
Statistics
Matches: 81, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
2 2 0.02
3 61 0.75
4 18 0.22
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:5758 original size:22 final size:22
Alignment explanation
Indices: 5733--5833 Score: 102
Period size: 22 Copynumber: 4.6 Consensus size: 22
5723 TAAGTAACAT
*
5733 TAATAGTAATAATAGTTAAT-AA
1 TAATATTAATAATA-TTAATAAA
*
5755 TAATAATAACT-AT-TTAATAAA
1 TAATATTAA-TAATATTAATAAA
* *
5776 TAATATTAATATTAATAATAAA
1 TAATATTAATAATATTAATAAA
*
5798 TAGTATTAATAAATATTAATAAA
1 TAATATTAAT-AATATTAATAAA
5821 -AATATTAATAATA
1 TAATATTAATAATA
5834 AAATGAATAA
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
20 6 0.09
21 15 0.23
22 34 0.52
23 11 0.17
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (22 bp):
TAATATTAATAATATTAATAAA
Found at i:5774 original size:14 final size:12
Alignment explanation
Indices: 5739--5834 Score: 75
Period size: 13 Copynumber: 7.5 Consensus size: 12
5729 ACATTAATAG
5739 TAATAATAGTTAA
1 TAATAATA-TTAA
*
5752 TAATAATAATAA
1 TAATAATATTAA
* *
5764 CTATTTAATAAATAA
1 -TA-ATAAT-ATTAA
*
5779 TATTAATATTAA
1 TAATAATATTAA
* *
5791 TAATAAATAGTAT
1 TAAT-AATATTAA
5804 TAATAAATATTAA
1 TAAT-AATATTAA
*
5817 TAAAAATATTAA
1 TAATAATATTAA
5829 TAATAA
1 TAATAA
5835 AATGAATAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
12 23 0.33
13 35 0.51
14 6 0.09
15 5 0.07
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:5825 original size:12 final size:13
Alignment explanation
Indices: 5783--5835 Score: 81
Period size: 13 Copynumber: 4.2 Consensus size: 13
5773 AAATAATATT
5783 AATATTAATAATA
1 AATATTAATAATA
* *
5796 AATAGTATTAATA
1 AATATTAATAATA
5809 AATATTAATAA-A
1 AATATTAATAATA
5821 AATATTAATAATA
1 AATATTAATAATA
5834 AA
1 AA
5836 ATGAATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
12 12 0.34
13 23 0.66
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (13 bp):
AATATTAATAATA
Found at i:5847 original size:25 final size:26
Alignment explanation
Indices: 5774--5847 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 26
5764 CTATTTAATA
* *
5774 AATAATATTAATATTAATAATAAATAGT
1 AATAATA--AATATGAATAAAAAATAGT
* * *
5802 ATTAATAAATATTAAT-AAAAATATT
1 AATAATAAATATGAATAAAAAATAGT
5827 AATAATAAA-ATGAATAAAAAA
1 AATAATAAATATGAATAAAAAA
5848 GTGAAACCGA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 5 0.12
25 20 0.50
26 9 0.22
28 6 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (26 bp):
AATAATAAATATGAATAAAAAATAGT
Found at i:6935 original size:29 final size:29
Alignment explanation
Indices: 6902--7245 Score: 285
Period size: 29 Copynumber: 11.8 Consensus size: 29
6892 GGAGGTCCCT
6902 GAACTTCCAAAAATTCCATTTTTTACCCC
1 GAACTTCCAAAAATTCCATTTTTTACCCC
* ** *
6931 GAACTCCCAAAAATTCCATTTTCAACCCTA
1 GAACTTCCAAAAATTCCATTTTTTACCC-C
*
6961 AAACTTCCAAAAATTCCA-TTTTTACCCC
1 GAACTTCCAAAAATTCCATTTTTTACCCC
* * **
6989 TAAACTTCCAAAAATTCCATTTTTGACCTT
1 -GAACTTCCAAAAATTCCATTTTTTACCCC
* * *
7019 GAAACTTACGAAAATTCCATTTTTTACCTC
1 G-AACTTCCAAAAATTCCATTTTTTACCCC
*
7049 GAACTCCCAAAAATTCCATTTTTTACCCC
1 GAACTTCCAAAAATTCCATTTTTTACCCC
**
7078 GAAACTTCCAAAAATTCCATTTTCAACCCC
1 G-AACTTCCAAAAATTCCATTTTTTACCCC
**
7108 GTAAC-TCCTAAAAATTCCATTTTTGCCCCC
1 G-AACTTCC-AAAAATTCCATTTTTTACCCC
* * * ** *
7138 GGA-TGTCCAAAAACTCTATTTTCGACCTC
1 GAACT-TCCAAAAATTCCATTTTTTACCCC
7167 GAAAC-TCCAAAAATTCCA--TTTTACCCCC
1 G-AACTTCCAAAAATTCCATTTTTTA-CCCC
*
7195 GAA-TGTCTAAAAATTCCA--TTTTACCCCC
1 GAACT-TCCAAAAATTCCATTTTTTA-CCCC
*
7223 GAA-TGTCTAAAAATTCCATTTTT
1 GAACT-TCCAAAAATTCCATTTTT
7246 AACCATGATT
Statistics
Matches: 259, Mismatches: 41, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.02
28 44 0.17
29 107 0.41
30 103 0.40
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (29 bp):
GAACTTCCAAAAATTCCATTTTTTACCCC
Found at i:7000 original size:59 final size:59
Alignment explanation
Indices: 6898--7249 Score: 312
Period size: 59 Copynumber: 6.0 Consensus size: 59
6888 CCTTGGAGGT
*
6898 CCCTG-AACTTCCAAAAATTCCATTTTTTACCCCGAACTCCCAAAAATTCCATTTTCAA
1 CCCTGAAACTTCCAAAAATTCCATTTTTTACCCCGAACTCCCAAAAATTCCATTTTTAA
* * * *
6956 CCCTAAAACTTCCAAAAATTCCA-TTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGA
1 CCCTGAAACTTCCAAAAATTCCATTTTTTACCCC-GAACTCCCAAAAATTCCATTTTTAA
* * * * *
7015 CCTTGAAACTTACGAAAATTCCATTTTTTACCTCGAACTCCCAAAAATTCCATTTTTTA
1 CCCTGAAACTTCCAAAAATTCCATTTTTTACCCCGAACTCCCAAAAATTCCATTTTTAA
* ** * **
7074 CCCCGAAACTTCCAAAAATTCCATTTTCAACCCCGTAACTCCTAAAAATTCCATTTTTGC
1 CCCTGAAACTTCCAAAAATTCCATTTTTTACCCCG-AACTCCCAAAAATTCCATTTTTAA
* * * * ** * *
7134 CCCCG-GA-TGTCCAAAAACTCTATTTTCGACCTCGAAACT-CCAAAAATTCCA-TTTTAC
1 CCCTGAAACT-TCCAAAAATTCCATTTTTTACCCCG-AACTCCCAAAAATTCCATTTTTAA
* * * *
7191 CCCCG-AA-TGTCTAAAAATTCCA--TTTTACCCCCGAA-TGTCTAAAAATTCCATTTTTAA
1 CCCTGAAACT-TCCAAAAATTCCATTTTTTA-CCCCGAACT-CCCAAAAATTCCATTTTTAA
7248 CC
1 CC
7250 ATGATTTTTC
Statistics
Matches: 245, Mismatches: 40, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
54 1 0.00
55 5 0.02
56 15 0.06
57 30 0.12
58 26 0.11
59 133 0.54
60 35 0.14
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (59 bp):
CCCTGAAACTTCCAAAAATTCCATTTTTTACCCCGAACTCCCAAAAATTCCATTTTTAA
Found at i:7207 original size:28 final size:28
Alignment explanation
Indices: 7055--7244 Score: 163
Period size: 28 Copynumber: 6.6 Consensus size: 28
7045 CCTCGAACTC
7055 CCAAAAATTCCATTTTTTA-CCCCGAAACT-T
1 CCAAAAATTCCA--TTTTACCCCCG-AA-TGT
* *
7085 CCAAAAATTCCATTTTCAACCCCGTAA-CT
1 CCAAAAATTCCATTTT-ACCCCCG-AATGT
* *
7114 CCTAAAAATTCCATTTTTGCCCCCGGATGT
1 CC-AAAAATTCCA-TTTTACCCCCGAATGT
* * * **
7144 CCAAAAACTCTATTTT-CGACCTCGAAACT
1 CCAAAAATTCCATTTTAC--CCCCGAATGT
7173 CCAAAAATTCCATTTTACCCCCGAATGT
1 CCAAAAATTCCATTTTACCCCCGAATGT
*
7201 CTAAAAATTCCATTTTACCCCCGAATGT
1 CCAAAAATTCCATTTTACCCCCGAATGT
*
7229 CTAAAAATTCCATTTT
1 CCAAAAATTCCATTTT
7245 TAACCATGAT
Statistics
Matches: 134, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.01
28 58 0.43
29 33 0.25
30 38 0.28
31 4 0.03
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
CCAAAAATTCCATTTTACCCCCGAATGT
Found at i:7581 original size:96 final size:96
Alignment explanation
Indices: 7476--7667 Score: 244
Period size: 96 Copynumber: 2.0 Consensus size: 96
7466 AAAACTTTAG
* *
7476 AATCGAGGCAATA-TTCTTTTAT-TTCGAGTTTCAAAAATTTGTGCCTTAACTCACTAGGTGCAA
1 AATCGAGGCAATATTTC-CTTATCTTCGAGTTTCAAAAA-TTGCGCCTTAACTCACTAGGTGCAA
**
7539 TTTTTCTTCAAATCGAAATAATCGAATACCCTT
64 CCTTTCTTCAAATCGAAATAATCGAATACCCTT
* * * * * *
7572 AATCGAGGCAATGTTTCCTTATCTTCGATTTTGAAATATTGCGCCTTAAGTTACTAGGTGCAACC
1 AATCGAGGCAATATTTCCTTATCTTCGAGTTTCAAAAATTGCGCCTTAACTCACTAGGTGCAACC
* *
7637 TTTCTTCAAATCGAGATAATCGAATATCCTT
66 TTTCTTCAAATCGAAATAATCGAATACCCTT
7668 TTCACAAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
96 67 0.82
97 15 0.18
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (96 bp):
AATCGAGGCAATATTTCCTTATCTTCGAGTTTCAAAAATTGCGCCTTAACTCACTAGGTGCAACC
TTTCTTCAAATCGAAATAATCGAATACCCTT
Found at i:12032 original size:93 final size:95
Alignment explanation
Indices: 11872--12042 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 95
11862 ACGGTTTCAT
* *
11872 CCATTATGTCATCTTGTTATAAAAATATTATTGTTTTTATCATAAAATTATTGCGGAAACAATTT
1 CCATTATGTCATCTTATTATAAAAATATTATTATTTTTATCATAAAATTATTGCGGAAACAATTT
*
11937 TAA-TAAAAAAAATTGATACGACAGATCAC
66 TAACCAAAAAAAATTGATACGACAGATCAC
* * * * * *
11966 CCATTATGTTATCTTATTAT-AAAATATTATTATTTTTATTATGAAATTGTTG-TGAAGATAATT
1 CCATTATGTCATCTTATTATAAAAATATTATTATTTTTATCATAAAATTATTGCGGAA-ACAATT
12029 TTAACCAAAAAAAA
65 TTAACCAAAAAAAA
12043 AATATGTTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 3 0.05
93 37 0.56
94 26 0.39
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (95 bp):
CCATTATGTCATCTTATTATAAAAATATTATTATTTTTATCATAAAATTATTGCGGAAACAATTT
TAACCAAAAAAAATTGATACGACAGATCAC
Done.