Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002704.1 Kokia drynarioides strain JFW-HI SEQ_114990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3903
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:875 original size:6 final size:7

Alignment explanation


    Indices: 860--884  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

        850 ATGGGTATTC

                   
        860 TTTTCTT
          1 TTTTCTT

                   
        867 TTTTCTT
          1 TTTTCTT

                   
        874 TTTTCTT
          1 TTTTCTT

                
        881 TTTT
          1 TTTT

        885 TTGGCTCTTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTCTT
Done.