Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002708.1 Kokia drynarioides strain JFW-HI SEQ_114994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4593
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34


Found at i:274 original size:12 final size:11

Alignment explanation


    Indices: 237--270  Score: 50
    Period size: 11  Copynumber: 3.0  Consensus size: 11

        227 TACTAAATAA

                       
        237 AAAAATTAAAT
          1 AAAAATTAAAT

                   *    
        248 AACAAATAAAAT
          1 AA-AAATTAAAT

                       
        260 AAAAATTAAAT
          1 AAAAATTAAAT

        271 TAAACAAAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  11   10  0.50
  12   10  0.50

ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24


Consensus pattern (11 bp):   
AAAAATTAAAT
Done.