Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002709.1 Kokia drynarioides strain JFW-HI SEQ_114995, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1396
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26


Found at i:529 original size:19 final size:19

Alignment explanation


    Indices: 505--542  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        495 TATCGAGGTT

                               
        505 GAAATACCTTCCCTCCGAG
          1 GAAATACCTTCCCTCCGAG

                               
        524 GAAATACCTTCCCTCCGAG
          1 GAAATACCTTCCCTCCGAG

        543 TCTTAACCGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.26, C:0.37, G:0.16, T:0.21


Consensus pattern (19 bp):   
GAAATACCTTCCCTCCGAG
Done.