Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002710.1 Kokia drynarioides strain JFW-HI SEQ_114999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4461
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:569 original size:11 final size:12

Alignment explanation


    Indices: 539--568  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        529 TAAAATTATT

                      * 
        539 CATTTTTACTTA
          1 CATTTTTACTCA

                        
        551 CATTTTTACTCA
          1 CATTTTTACTCA

                  
        563 CATTTT
          1 CATTTT

        569 AATAATACAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57


Consensus pattern (12 bp):   
CATTTTTACTCA

Found at i:817 original size:5 final size:6

Alignment explanation


    Indices: 784--814  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        774 AAGAAGAAAT

                                                 
        784 GGGAGG GGGAGG GGGAGG GGGA-G GGGAGG GG
          1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GG

        815 AGGAGAGAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    5  0.21
   6   19  0.79

ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00


Consensus pattern (6 bp):   
GGGAGG
Done.