Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002714.1 Kokia drynarioides strain JFW-HI SEQ_115009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36


Found at i:1744 original size:147 final size:147

Alignment explanation


    Indices: 1477--1746  Score: 441
    Period size: 147  Copynumber: 1.8  Consensus size: 147

       1467 TTTGAACATG

                        *                                    *     **        
       1477 AGGGACATCGCTTGAGATTCTGGTAACATGCATGTGTTCTTTTACAATCGAATCAGGGAAAAATG
          1 AGGGACATCGCTCGAGATTCTGGTAACATGCATGTGTTCTTTTACAATCAAATCAACGAAAAATG

             *       **                        * *                           
       1542 TTCCTAGGGTGACTCGTGGACCACACAAACCATCATATGATTATGTTCCCCAAAAACCTAAGGTT
         66 TGCCTAGGGCCACTCGTGGACCACACAAACCATCACACGATTATGTTCCCCAAAAACCTAAGGTT

                             
       1607 TTTCGATTTTCACATTA
        131 TTTCGATTTTCACATTA

                                                                          *  
       1624 AGGGACATCGCTCGAGATTCTGGTAACATGCATGTGTTCTTTTACAATCAAATCAACGAAAATTG
          1 AGGGACATCGCTCGAGATTCTGGTAACATGCATGTGTTCTTTTACAATCAAATCAACGAAAAATG

                                       *                              
       1689 TGCCTAGGGCCACTCGTGGACCACACAGACCATCACACGATTATGTTCCCCAAAAACC
         66 TGCCTAGGGCCACTCGTGGACCACACAAACCATCACACGATTATGTTCCCCAAAAACC


Statistics
Matches: 112,  Mismatches: 11, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 147  112  1.00

ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27


Consensus pattern (147 bp):   
AGGGACATCGCTCGAGATTCTGGTAACATGCATGTGTTCTTTTACAATCAAATCAACGAAAAATG
TGCCTAGGGCCACTCGTGGACCACACAAACCATCACACGATTATGTTCCCCAAAAACCTAAGGTT
TTTCGATTTTCACATTA
Done.