Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002716.1 Kokia drynarioides strain JFW-HI SEQ_115011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2841
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:935 original size:17 final size:17

Alignment explanation


    Indices: 908--948  Score: 64
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        898 GGACAAAGTA

                              
        908 GTTACAAGAATATGAAAG
          1 GTTA-AAGAATATGAAAG

                         *   
        926 GTTAAAGAATATGGAAG
          1 GTTAAAGAATATGAAAG

                  
        943 GTTAAA
          1 GTTAAA

        949 CGTCAAAGGA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17   18  0.82
  18    4  0.18

ACGTcount: A:0.49, C:0.02, G:0.24, T:0.24


Consensus pattern (17 bp):   
GTTAAAGAATATGAAAG

Found at i:1867 original size:55 final size:55

Alignment explanation


    Indices: 1806--1914  Score: 191
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1796 TCTTTCTTTA

                                       *                           
       1806 AGCACTCCATTATCACTAAATTCTCTTTAGCAGTCTTAATGATATTTAAATCATT
          1 AGCACTCCATTATCACTAAATTCTCTTCAGCAGTCTTAATGATATTTAAATCATT

                                  *       *                       
       1861 AGCACTCCATTATCACTAAATTTTCTTCAGGAGTCTTAATGATATTTAAATCAT
          1 AGCACTCCATTATCACTAAATTCTCTTCAGCAGTCTTAATGATATTTAAATCAT

       1915 CAACATACAC


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  55   51  1.00

ACGTcount: A:0.33, C:0.19, G:0.08, T:0.39


Consensus pattern (55 bp):   
AGCACTCCATTATCACTAAATTCTCTTCAGCAGTCTTAATGATATTTAAATCATT
Done.