Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002737.1 Kokia drynarioides strain JFW-HI SEQ_115041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73847
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Found at i:2533 original size:29 final size:26
Alignment explanation
Indices: 2501--2583 Score: 67
Period size: 29 Copynumber: 2.9 Consensus size: 26
2491 TTCAAGGTAG
2501 AAATGAAATTTTTCAAAATTTTGGAGCA
1 AAAT-AAATTTTTCAAAATTTTGGAG-A
* *
2529 TAAATAAAATTTTCTAAAAGTTTTAAGAGA
1 -AAATAAATTTTTC-AAAA-TTTT-GGAGA
*
2559 AAATCATAATTTCTCAAAATTTTGG
1 AAAT-A-AATTTTTCAAAATTTTGG
2584 GGGCTAAAGC
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
28 9 0.20
29 16 0.36
30 10 0.23
31 9 0.20
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (26 bp):
AAATAAATTTTTCAAAATTTTGGAGA
Found at i:7353 original size:86 final size:83
Alignment explanation
Indices: 7214--7409 Score: 270
Period size: 86 Copynumber: 2.3 Consensus size: 83
7204 ACTTTTATAT
* * * * *
7214 GTCTAAAATCAAACTAAATCAACCC--CAAAAATTTTCTAGAAATAACTATTCAAAGATCATGAA
1 GTCTAACAGCAAACTAAATCAACCCAAAAAAAAATTTCTAGAAATAACTATTCAAAAATCATGAA
*
7277 AAGTCGTCACCTGTACAT
66 AAGTCGTCACCTGTACAA
*
7295 GTCTCTAACAGCAAACTAAATCAACCCAAAAAGAAAATTTCTAGAAATGACTATTCAAAAATCAT
1 G--TCTAACAGCAAACTAAATCAACCCAAAAA-AAAATTTCTAGAAATAACTATTCAAAAATCAT
*
7360 GAAAAGTCGTCACCTGTAGAA
63 GAAAAGTCGTCACCTGTACAA
*
7381 GTCTAGCAGCAAACTAAATCAACCCAAAA
1 GTCTAACAGCAAACTAAATCAACCCAAAA
7410 GATAACTGAC
Statistics
Matches: 101, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
81 1 0.01
83 22 0.22
84 27 0.27
85 2 0.02
86 49 0.49
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.22
Consensus pattern (83 bp):
GTCTAACAGCAAACTAAATCAACCCAAAAAAAAATTTCTAGAAATAACTATTCAAAAATCATGAA
AAGTCGTCACCTGTACAA
Found at i:11441 original size:30 final size:30
Alignment explanation
Indices: 11365--11442 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
11355 TCTATATTTT
*
11365 CCAAGTTCAA-AACCAAAATAGATCTAATTA
1 CCAAGTTCAAGAACC-AAATAGACCTAATTA
* * * * *
11395 CCCAGTTTAAGTACCAAATGGACCTAGTTA
1 CCAAGTTCAAGAACCAAATAGACCTAATTA
11425 CCAAGTTCAAGAACCAAA
1 CCAAGTTCAAGAACCAAA
11443 AATTACATTA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 35 0.92
31 3 0.08
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.22
Consensus pattern (30 bp):
CCAAGTTCAAGAACCAAATAGACCTAATTA
Found at i:28064 original size:4 final size:4
Alignment explanation
Indices: 28055--28084 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
28045 AGGTACCATT
*
28055 TGTA TGTA TGTA TGTA TGCA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
28085 CATGGTGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:28072 original size:12 final size:12
Alignment explanation
Indices: 28055--28088 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
28045 AGGTACCATT
*
28055 TGTATGTATGTA
1 TGTATGCATGTA
28067 TGTATGCATGTA
1 TGTATGCATGTA
28079 TGTATGCATG
1 TGTATGCATG
28089 GTGTTGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.06, G:0.26, T:0.44
Consensus pattern (12 bp):
TGTATGCATGTA
Found at i:33827 original size:5 final size:5
Alignment explanation
Indices: 33817--33850 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
33807 ATACGCAAGT
33817 CATTG CATTG CATTG CATTG CATTG CATTG CATT
1 CATTG CATTG CATTG CATTG CATTG CATTG CATT
33851 TTCATTGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (5 bp):
CATTG
Found at i:35454 original size:33 final size:33
Alignment explanation
Indices: 35416--35485 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
35406 CTCTAATCAT
* * *
35416 AACCCTAACTCTAAATACCAACACTAACCTTAA
1 AACCCTAACCCTAAACACCAACACTAACCCTAA
*
35449 AACCCTAACCCTAAACACCAACCCTAACCCTAA
1 AACCCTAACCCTAAACACCAACACTAACCCTAA
35482 AACC
1 AACC
35486 TTACACTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (33 bp):
AACCCTAACCCTAAACACCAACACTAACCCTAA
Found at i:35578 original size:26 final size:26
Alignment explanation
Indices: 35529--35578 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35519 ACTCTAAACT
*
35529 TTAAACCCTATCCCTAACCCTAAAAA
1 TTAAACCCTATCCCTAACACTAAAAA
* *
35555 TTAAACCTTATCCCTAACATTAAA
1 TTAAACCCTATCCCTAACACTAAA
35579 CCCTAACCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (26 bp):
TTAAACCCTATCCCTAACACTAAAAA
Found at i:35603 original size:18 final size:18
Alignment explanation
Indices: 35577--35615 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
35567 CCTAACATTA
*
35577 AACCCTAACCCCAACCAT
1 AACCATAACCCCAACCAT
* *
35595 AACCATAACCCTAACCCT
1 AACCATAACCCCAACCAT
35613 AAC
1 AAC
35616 ATTAACCCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (18 bp):
AACCATAACCCCAACCAT
Found at i:35621 original size:18 final size:19
Alignment explanation
Indices: 35540--35664 Score: 69
Period size: 19 Copynumber: 6.3 Consensus size: 19
35530 TAAACCCTAT
*
35540 CCCTAACCCTAAAAATTAAA
1 CCCTAACCCT-AACATTAAA
* *
35560 CCTTATCCCTAACATTAAA
1 CCCTAACCCTAACATTAAA
* *
35579 CCCTAACCCCAACCATAACCATAA
1 CCCTAACCCTAA-CAT---TA-AA
35603 CCCTAACCCTAACATT-AA
1 CCCTAACCCTAACATTAAA
*
35621 CCCTAAACACC-AACACTAAA
1 CCCT-AAC-CCTAACATTAAA
* *
35641 CCTTAAACCCT-ACA-CAAA
1 CCCT-AACCCTAACATTAAA
35659 CCCTAA
1 CCCTAA
35665 ATACCAACAC
Statistics
Matches: 83, Mismatches: 13, Indels: 21
0.71 0.11 0.18
Matches are distributed among these distances:
17 2 0.02
18 12 0.14
19 30 0.36
20 22 0.27
23 4 0.05
24 13 0.16
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.18
Consensus pattern (19 bp):
CCCTAACCCTAACATTAAA
Found at i:35674 original size:19 final size:19
Alignment explanation
Indices: 35619--35684 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
35609 CCCTAACATT
35619 AACCCTAAACACCAACACTA
1 AACCCTAAA-ACCAACACTA
* * *
35639 AACCTTAAACCCTACAC-A
1 AACCCTAAAACCAACACTA
35657 AACCCTAAATACCAACACTA
1 AACCCTAAA-ACCAACACTA
*
35677 AGCCCTAA
1 AACCCTAA
35685 CTTAAACCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 9 0.24
19 12 0.32
20 16 0.43
ACGTcount: A:0.47, C:0.38, G:0.02, T:0.14
Consensus pattern (19 bp):
AACCCTAAAACCAACACTA
Found at i:35697 original size:7 final size:7
Alignment explanation
Indices: 35687--35856 Score: 59
Period size: 7 Copynumber: 24.9 Consensus size: 7
35677 AGCCCTAACT
35687 TAAACCC
1 TAAACCC
* *
35694 TAAATCT
1 TAAACCC
*
35701 TAAACAC
1 TAAACCC
*
35708 TAAA-CT
1 TAAACCC
**
35714 TAAACAG
1 TAAACCC
*
35721 TAAACCA
1 TAAACCC
*
35728 TAAACTC
1 TAAACCC
*
35735 TAAACAC
1 TAAACCC
35742 TAAA-CC
1 TAAACCC
*
35748 TTAACCC
1 TAAACCC
*
35755 TAAACAC
1 TAAACCC
35762 -AAACCC
1 TAAACCC
35768 T-AACCC
1 TAAACCC
*
35774 TAAAACCT
1 T-AAACCC
*
35782 TACCATACCA
1 TA--A-ACCC
*
35792 TAAA-CT
1 TAAACCC
35798 TAAACCC
1 TAAACCC
35805 T-AACCC
1 TAAACCC
* *
35811 TAAAACA
1 TAAACCC
* *
35818 TTAACAC
1 TAAACCC
*
35825 TAATCCC
1 TAAACCC
*
35832 -CAACCC
1 TAAACCC
*
35838 T-AATCC
1 TAAACCC
35844 TAAACCC
1 TAAACCC
35851 TAAACC
1 TAAACC
35857 TTAATCACCA
Statistics
Matches: 115, Mismatches: 36, Indels: 24
0.66 0.21 0.14
Matches are distributed among these distances:
6 39 0.34
7 64 0.56
8 6 0.05
9 1 0.01
10 5 0.04
ACGTcount: A:0.46, C:0.34, G:0.01, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:35724 original size:27 final size:27
Alignment explanation
Indices: 35683--35765 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
35673 ACTAAGCCCT
* * *
35683 AACTTAAACCCTAAATCTTAAACACTA
1 AACTTAAACACTAAACCATAAACACTA
* *
35710 AACTTAAACAGTAAACCATAAACTCTA
1 AACTTAAACACTAAACCATAAACACTA
* * *
35737 AACACTAAAC-CTTAACCCTAAACAC-A
1 AAC-TTAAACACTAAACCATAAACACTA
35763 AAC
1 AAC
35766 CCTAACCCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 4 0.09
27 36 0.80
28 5 0.11
ACGTcount: A:0.51, C:0.28, G:0.01, T:0.20
Consensus pattern (27 bp):
AACTTAAACACTAAACCATAAACACTA
Found at i:35771 original size:19 final size:20
Alignment explanation
Indices: 35714--36001 Score: 83
Period size: 19 Copynumber: 14.6 Consensus size: 20
35704 ACACTAAACT
* * *
35714 TAAACAGTAAACCATAAACTC
1 TAAACACTAAACCCT-AACCC
*
35735 TAAACACTAAACCTTAACCC
1 TAAACACTAAACCCTAACCC
35755 TAAACAC-AAACCCTAACCC
1 TAAACACTAAACCCTAACCC
* * *
35774 TAAA-ACCT-TACCAT-ACCA
1 TAAACA-CTAAACCCTAACCC
*
35792 TAAAC-TTAAACCCTAACCC
1 TAAACACTAAACCCTAACCC
* *
35811 TAAA-ACATTAACACTAATCCC
1 TAAACAC-TAAACCCTAA-CCC
* * *
35832 -CAACCCT-AATCCTAAACCC
1 TAAACACTAAACCCT-AACCC
* *
35851 TAAAC-CTTAATCACC-AACCT
1 TAAACAC-TAAAC-CCTAACCC
* **
35871 TAAAC-CTTAACATTAAACACC
1 TAAACACTAAACCCT-AAC-CC
* *
35892 --AAC-CTTAAACCTTAACCT
1 TAAACAC-TAAACCCTAACCC
*
35910 TAAACAC-CAACCCTAACCAC
1 TAAACACTAAACCCTAACC-C
35930 -AAATCA-TAAACCCTAACCC
1 TAAA-CACTAAACCCTAACCC
* * *
35949 TAAATAC-CAACCTTAACCC
1 TAAACACTAAACCCTAACCC
35968 TTAAAC-CATAAACCCTAACCC
1 -TAAACAC-TAAACCCTAACCC
*
35989 TTAAACCCTAAAC
1 -TAAACACTAAAC
36002 ATTAACATTA
Statistics
Matches: 197, Mismatches: 40, Indels: 60
0.66 0.13 0.20
Matches are distributed among these distances:
17 1 0.01
18 13 0.07
19 70 0.36
20 69 0.35
21 41 0.21
22 3 0.02
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAACACTAAACCCTAACCC
Found at i:35940 original size:39 final size:39
Alignment explanation
Indices: 35892--35994 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 39
35882 ATTAAACACC
* *
35892 AACCTTAAACCTTAACCTTAAACACCAACCCTAACCAC-A
1 AACCATAAACCCTAACCTTAAACACCAACCCTAACC-CTA
* * * *
35931 AATCATAAACCCTAACCCTAAATACCAACCTTAACCCTTA
1 AACCATAAACCCTAACCTTAAACACCAACCCTAACCC-TA
35971 AACCATAAACCCTAACCCTTAAAC
1 AACCATAAACCCTAA-CCTTAAAC
35995 CCTAAACATT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.02
39 30 0.58
40 15 0.29
41 6 0.12
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (39 bp):
AACCATAAACCCTAACCTTAAACACCAACCCTAACCCTA
Found at i:36019 original size:7 final size:7
Alignment explanation
Indices: 35957--36121 Score: 78
Period size: 7 Copynumber: 24.3 Consensus size: 7
35947 CCTAAATACC
35957 AACCTTA
1 AACCTTA
*
35964 ACCCTTA
1 AACCTTA
*
35971 AACCATA
1 AACCTTA
*
35978 AACCCTA
1 AACCTTA
*
35985 ACCCTTA
1 AACCTTA
*
35992 AACCCTA
1 AACCTTA
*
35999 AACATT-
1 AACCTTA
*
36005 AACATTA
1 AACCTTA
36012 AACCTTA
1 AACCTTA
*
36019 AACCCT-
1 AACCTTA
*
36025 AA-CATA
1 AACCTTA
* *
36031 ATCCAT-
1 AACCTTA
36037 AA-CTTA
1 AACCTTA
36043 AACCTTA
1 AACCTTA
36050 AACCTT-
1 AACCTTA
*
36056 AA-CATA
1 AACCTTA
* *
36062 ATCCAT-
1 AACCTTA
36068 AA-CTTA
1 AACCTTA
*
36074 AACCCTA
1 AACCTTA
36081 AACCTTAACA
1 AACCTT---A
36091 CAACCTTA
1 -AACCTTA
*
36099 AACCCTA
1 AACCTTA
*
36106 AACATTA
1 AACCTTA
36113 AACCTTA
1 AACCTTA
36120 AA
1 AA
36122 AGATTAATGT
Statistics
Matches: 119, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
5 8 0.07
6 18 0.15
7 85 0.71
8 1 0.01
10 1 0.01
11 6 0.05
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:36047 original size:31 final size:31
Alignment explanation
Indices: 36004--36090 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
35994 CCCTAAACAT
*
36004 TAACATTAAACCTTAAACCCTAACATAATCCA
1 TAAC-TTAAACCTTAAACCTTAACATAATCCA
36036 TAACTTAAACCTTAAACCTTAACATAATCCA
1 TAACTTAAACCTTAAACCTTAACATAATCCA
*
36067 TAACTTAAACCCTAAACCTTAACA
1 TAACTTAAACCTTAAACCTTAACA
36091 CAACCTTAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
31 49 0.92
32 4 0.08
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (31 bp):
TAACTTAAACCTTAAACCTTAACATAATCCA
Found at i:36115 original size:14 final size:14
Alignment explanation
Indices: 35685--36121 Score: 104
Period size: 13 Copynumber: 32.9 Consensus size: 14
35675 TAAGCCCTAA
*
35685 CTTAAACCCTAAAT
1 CTTAAACCCTAAAC
*
35699 CTTAAACACTAAA-
1 CTTAAACCCTAAAC
**
35712 CTTAAACAGTAAAC
1 CTTAAACCCTAAAC
* *
35726 CATAAACTCTAAAC
1 CTTAAACCCTAAAC
*
35740 AC-TAAA-CCTTAAC
1 -CTTAAACCCTAAAC
* *
35753 CCTAAACAC-AAAC
1 CTTAAACCCTAAAC
*
35766 CCT-AACCCTAAAAC
1 CTTAAACCCT-AAAC
*
35780 CTT--A-CC-ATAC
1 CTTAAACCCTAAAC
* *
35790 CATAAA-CTTAAAC
1 CTTAAACCCTAAAC
*
35803 CCT-AACCCTAAAAC
1 CTTAAACCCT-AAAC
* * *
35817 ATT-AACACTAATC
1 CTTAAACCCTAAAC
** *
35830 C-CCAACCCTAATC
1 CTTAAACCCTAAAC
35843 C-TAAACCCTAAAC
1 CTTAAACCCTAAAC
*
35856 CTTAATCACC--AAC
1 CTTAAAC-CCTAAAC
*
35869 CTTAAA-CCTTAAC
1 CTTAAACCCTAAAC
*
35882 ATTAAACACC--AAC
1 CTTAAAC-CCTAAAC
*
35895 CTTAAA-CCTTAAC
1 CTTAAACCCTAAAC
35908 CTTAAACACC--AAC
1 CTTAAAC-CCTAAAC
* *
35921 CCT-AACCAC-AAAT
1 CTTAAACC-CTAAAC
*
35934 CATAAACCCT-AAC
1 CTTAAACCCTAAAC
* *
35947 CCTAAATACC--AAC
1 CTTAAA-CCCTAAAC
35960 CTT-AACCCTTAAAC
1 CTTAAACCC-TAAAC
* *
35974 CATAAACCCTAACC
1 CTTAAACCCTAAAC
35988 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
* **
36002 ATT-AACATTAAAC
1 CTTAAACCCTAAAC
36015 CTTAAACCCT-AA-
1 CTTAAACCCTAAAC
* * *
36027 CATAATCCAT-AA-
1 CTTAAACCCTAAAC
*
36039 CTTAAACCTTAAAC
1 CTTAAACCCTAAAC
*
36053 CTTAACATAATCC-ATAA-
1 CTT---A-AACCCTA-AAC
36070 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
*
36084 CTT-AACAC--AAC
1 CTTAAACCCTAAAC
36095 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
* *
36109 ATTAAACCTTAAA
1 CTTAAACCCTAAA
36122 AGATTAATGT
Statistics
Matches: 317, Mismatches: 62, Indels: 88
0.68 0.13 0.19
Matches are distributed among these distances:
10 5 0.02
11 13 0.04
12 37 0.12
13 137 0.43
14 103 0.32
15 12 0.04
17 5 0.02
18 5 0.02
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:36724 original size:11 final size:11
Alignment explanation
Indices: 36705--36749 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
36695 TATATAATAG
36705 TATATATTTAT
1 TATATATTTAT
36716 T-TGATATTTAT
1 TAT-ATATTTAT
36727 TATATATTTA-
1 TATATATTTAT
*
36737 -ATAAATTTAT
1 TATATATTTAT
36747 TAT
1 TAT
36750 TTCCTTTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
9 8 0.28
10 1 0.03
11 19 0.66
12 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATATATTTAT
Found at i:38029 original size:58 final size:57
Alignment explanation
Indices: 37980--38382 Score: 279
Period size: 58 Copynumber: 7.0 Consensus size: 57
37970 TTTTGGTCCT
* * * * *
37980 CAAACTTCCAAAATTACATTTTGACCCCTAAACTTTTCAAAAATTACATTTAAACCC
1 CAAACTTCCAAAATCACATTTTTACCCCTAAACTTCTCAAAAATTACATTTTACCCC
* * * * * *
38037 TAAACTTCTAAAAATTACATTTTAACCCTTAAACTTCTAAAAAATTACATTTTTACCCC
1 CAAACTTC-CAAAATCACATTTTTACCCCTAAACTTCTCAAAAATTACA-TTTTACCCC
** * * * * * *
38096 TTAACTTCTAAAAATCACATTTTTA-CCCTCGAACTCCTCAAAAATTACATTTTGCTCT
1 CAAACTTC-CAAAATCACATTTTTACCCCT-AAACTTCTCAAAAATTACATTTTACCCC
* * * *
38154 CTAACTTCCAAAAATCACATTTTTA-CCCTCGAACTCCT-AAAAATTACATTTTTGCCCC
1 CAAACTTCC-AAAATCACATTTTTACCCCT-AAACTTCTCAAAAATTACA-TTTTACCCC
* * *
38212 CAAACTTTCAAAATCACATTTTTACCTCGT--ACTT-TCAAAAATTATATTTTACCCC
1 CAAACTTCCAAAATCACATTTTTACC-CCTAAACTTCTCAAAAATTACATTTTACCCC
* * *** **
38267 CAAATTTCCAAAAATTACA-TTTTACCCCCGTACTTC-CAAAAATCGCATTTTTA-CCC
1 CAAACTTCC-AAAATCACATTTTTACCCCTAAACTTCTCAAAAATTACA-TTTTACCCC
* * *
38323 TAAACTTCTCAAAAAAT-ACATTTTTACCCCCAAACTTC-CAAAAATCACCATTTTACCCC
1 CAAACTTC-C--AAAATCACATTTTTACCCCTAAACTTCTCAAAAATTA-CATTTTACCCC
38382 C
1 C
38383 GAGCATCCAA
Statistics
Matches: 286, Mismatches: 42, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
54 1 0.00
55 23 0.08
56 41 0.14
57 41 0.14
58 128 0.45
59 52 0.18
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (57 bp):
CAAACTTCCAAAATCACATTTTTACCCCTAAACTTCTCAAAAATTACATTTTACCCC
Found at i:38366 original size:28 final size:28
Alignment explanation
Indices: 37956--38396 Score: 252
Period size: 29 Copynumber: 15.4 Consensus size: 28
37946 TCCCTAAATT
*** *
37956 TTCCAAAAATCACATTTTGGTCCTCAAAC
1 TTCCAAAAAT-ACATTTTTACCCCCAAAC
* * *
37985 TTCCAAAATTACATTTTGACCCCTAAAC
1 TTCCAAAAATACATTTTTACCCCCAAAC
* * * *
38013 TTTTCAAAAATTACA-TTTAAACCCTAAAC
1 -TTCCAAAAA-TACATTTTTACCCCCAAAC
* * **
38042 TTCTAAAAATTACATTTTAACCCTTAAAC
1 TTCCAAAAA-TACATTTTTACCCCCAAAC
* **
38071 TTCTAAAAAATTACATTTTTACCCCTTAAC
1 TTC-CAAAAA-TACATTTTTACCCCCAAAC
* * *
38101 TTCTAAAAATCACATTTTTACCCTCGAAC
1 TTCCAAAAAT-ACATTTTTACCCCCAAAC
* * * * *
38130 TCCTCAAAAATTACA-TTTTGCTCTCTAAC
1 TTC-CAAAAA-TACATTTTTACCCCCAAAC
* *
38159 TTCCAAAAATCACATTTTTACCCTCGAAC
1 TTCCAAAAAT-ACATTTTTACCCCCAAAC
*
38188 -TCCTAAAAATTACATTTTTGCCCCCAAAC
1 TTCC-AAAAA-TACATTTTTACCCCCAAAC
* * **
38217 TTTC-AAAATCACATTTTTA-CCTCGTAC
1 TTCCAAAAAT-ACATTTTTACCCCCAAAC
* * *
38244 TTTCAAAAAT-TATATTTTACCCCCAAAT
1 TTCCAAAAATACAT-TTTTACCCCCAAAC
**
38272 TTCCAAAAATTACA-TTTTACCCCCGTAC
1 TTCCAAAAA-TACATTTTTACCCCCAAAC
* *
38300 TTCCAAAAATCGCATTTTTA-CCCTAAAC
1 TTCCAAAAAT-ACATTTTTACCCCCAAAC
38328 TTCTCAAAAAATACATTTTTACCCCCAAAC
1 TTC-C-AAAAATACATTTTTACCCCCAAAC
* *
38358 TTCCAAAAATCACCA-TTTTACCCCCGAGC
1 TTCCAAAAAT-A-CATTTTTACCCCCAAAC
*
38387 ATCCAAAAAT
1 TTCCAAAAAT
38397 TACCATTTAT
Statistics
Matches: 330, Mismatches: 57, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
26 2 0.01
27 17 0.05
28 104 0.32
29 147 0.45
30 59 0.18
31 1 0.00
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (28 bp):
TTCCAAAAATACATTTTTACCCCCAAAC
Found at i:39039 original size:2 final size:2
Alignment explanation
Indices: 39032--39056 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39022 CGAGTTCTAA
39032 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
39057 CAAATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47664 original size:42 final size:42
Alignment explanation
Indices: 47617--47700 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
47607 CCCTTTTCAA
*
47617 ATGTTCATCATCCATTTAGAGAGATGCAGTTAGGAGTTAATC
1 ATGTTCATCATCCATTTAGAAAGATGCAGTTAGGAGTTAATC
47659 ATGTTCATCATCCATTTAGAAAGATGCAGTTAGGAGTTAATC
1 ATGTTCATCATCCATTTAGAAAGATGCAGTTAGGAGTTAATC
47701 GTTGGATGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (42 bp):
ATGTTCATCATCCATTTAGAAAGATGCAGTTAGGAGTTAATC
Found at i:51184 original size:17 final size:18
Alignment explanation
Indices: 51164--51209 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
51154 ATTCATGTTG
51164 AGTTTAAATTTAGTTT-A
1 AGTTTAAATTTAGTTTGA
51181 AGTTTAAATTTAGTTTGA
1 AGTTTAAATTTAGTTTGA
51199 A-TTTAAATTTA
1 AGTTTAAATTTA
51210 AATTAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 26 0.93
18 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (18 bp):
AGTTTAAATTTAGTTTGA
Found at i:51924 original size:25 final size:27
Alignment explanation
Indices: 51894--51965 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
51884 TTAAATAGTT
*
51894 ATTAATAAC-GTTAGTAAT-AA-ATAAC
1 ATTAATAACAG-TAATAATAAATATAAC
51919 ATTAATAACAGTAATAATAAATATAAC
1 ATTAATAACAGTAATAATAAATATAAC
* *
51946 ATTAATAATATTAATAATAA
1 ATTAATAACAGTAATAATAA
51966 TAAAAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 15 0.37
26 3 0.07
27 23 0.56
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (27 bp):
ATTAATAACAGTAATAATAAATATAAC
Found at i:51962 original size:18 final size:18
Alignment explanation
Indices: 51913--51962 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
51903 GTTAGTAATA
*
51913 AATAACATTAATAACAGT
1 AATAATATTAATAACAGT
* *
51931 AATAATA-AATATAACATT
1 AATAATATTA-ATAACAGT
51949 AATAATATTAATAA
1 AATAATATTAATAA
51963 TAATAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 24 0.92
19 1 0.04
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (18 bp):
AATAATATTAATAACAGT
Found at i:52354 original size:18 final size:19
Alignment explanation
Indices: 52320--52356 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
52310 GGCTCGCCAT
*
52320 GGTTTGAGGGAAAAAGGGA
1 GGTTTGAGAGAAAAAGGGA
52339 GGTTTGAGAG-AAAAGGGA
1 GGTTTGAGAGAAAAAGGGA
52357 AAAAAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.46, T:0.16
Consensus pattern (19 bp):
GGTTTGAGAGAAAAAGGGA
Found at i:53080 original size:119 final size:117
Alignment explanation
Indices: 52899--53274 Score: 431
Period size: 119 Copynumber: 3.2 Consensus size: 117
52889 CTAAACTATG
* *
52899 CAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACTCCGA-TTTTCCAAAAA
1 CAAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACACCAATTTTTCCAAAAA
* *
52963 TTACCATTTTACCCTCGAACT-TCCAAAAATTCCATTTTTTAC-CCTAATTTTTTTC
65 TTACCATTTTACCCTCGAACTCT-CAAAAATTCCATTTTTCACATC-AA--TTTTTC
*
53018 CAAAAATTACCATTTTACCCTCAAA-TTTCCAAAATTCCATTTTTGACACCAATTTTTCCAAAAA
1 CAAAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCATTTTTAACACCAATTTTTCCAAAAA
53082 TTACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACATCAATTTTTC
65 TTACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACATCAATTTTTC
* ** * * *
53135 CAAAAATTACCATTTTACCCCTAAACTTTCAAAAATTGTATTTTTTACCCCAATTTTTTTCAAAA
1 CAAAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACACCAA-TTTTTCCAAAA
* * ** * * * *
53200 ATTACCATTTTATCCTAAGATGTCT-AAAAATTCTATTTTTAACCTCGAA-CTTTC
64 ATTACCATTTTACCCT-CGAACTCTCAAAAATTCCATTTTTCACATC-AATTTTTC
* *
53254 CCAAAATTACCATTTTGCCCC
1 CAAAAATTACCATTTTACCCC
53275 TGAATGTCCA
Statistics
Matches: 227, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
116 1 0.00
117 29 0.13
118 49 0.22
119 139 0.61
120 9 0.04
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.39
Consensus pattern (117 bp):
CAAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACACCAATTTTTCCAAAAAT
TACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACATCAATTTTTC
Found at i:53217 original size:59 final size:59
Alignment explanation
Indices: 52899--53211 Score: 400
Period size: 58 Copynumber: 5.3 Consensus size: 59
52889 CTAAACTATG
* * * * *
52899 CAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACTCCGA-TTTTC
1 CAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTTACACCAATTTTTC
* *
52957 CAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTTAC-CCTAATTTTTTTC
1 CAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTTACACC-AA--TTTTTC
* *
53018 CAAAAATTACCATTTTACCCTCAAA-TTTCCAAAATTCCATTTTTGACACCAATTTTTC
1 CAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTTACACCAATTTTTC
* * * *
53076 CAAAAATTACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACATCAATTTTTC
1 CAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTTACACCAATTTTTC
** * *
53135 CAAAAATTACCATTTTACCC-CTAAACTTTCAAAAATTGTATTTTTTACCCCAATTTTTTT
1 CAAAAATTACCATTTTACCCTC-AAACTTTCAAAAATTCCATTTTTTACACCAA-TTTTTC
53195 CAAAAATTACCATTTTA
1 CAAAAATTACCATTTTA
53212 TCCTAAGATG
Statistics
Matches: 224, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
57 2 0.01
58 75 0.33
59 73 0.33
60 43 0.19
61 31 0.14
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.39
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTTACACCAATTTTTC
Found at i:53229 original size:60 final size:57
Alignment explanation
Indices: 52899--53269 Score: 354
Period size: 59 Copynumber: 6.3 Consensus size: 57
52889 CTAAACTATG
* * * * *
52899 CAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACTCCGA-TTTTC
1 CAAAAATTACCATTTTA-CCCTAAA-TTTCAAAAATTCCATTTTTTACACCAATTTTTC
* *
52957 CAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTTAC-CCTAATTTTTTTC
1 CAAAAATTACCATTTTACCCT--AAATTTCAAAAATTCCATTTTTTACACC-AA--TTTTTC
* *
53018 CAAAAATTACCATTTTACCCTCAAATTTCCAAAATTCCATTTTTGACACCAATTTTTC
1 CAAAAATTACCATTTTACCCT-AAATTTCAAAAATTCCATTTTTTACACCAATTTTTC
* * * *
53076 CAAAAATTACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACATCAATTTTTC
1 CAAAAATTACCATTTTACCCT--AAATTTCAAAAATTCCATTTTTTACACCAATTTTTC
** * *
53135 CAAAAATTACCATTTTACCCCTAAACTTTCAAAAATTGTATTTTTTACCCCAATTTTTTT
1 CAAAAATTACCATTTTA-CCCTAAA-TTTCAAAAATTCCATTTTTTACACCAA-TTTTTC
* * * * *
53195 CAAAAATTACCATTTTATCCTAAGATGTCTAAAAATTCTATTTTTAAC-CTCGAA-CTTTC
1 CAAAAATTACCATTTTACCCTAA-ATTTC-AAAAATTCCATTTTTTACAC-C-AATTTTTC
*
53254 CCAAAATTACCATTTT
1 CAAAAATTACCATTTT
53270 GCCCCTGAAT
Statistics
Matches: 266, Mismatches: 32, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
57 5 0.02
58 66 0.25
59 98 0.37
60 67 0.25
61 30 0.11
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (57 bp):
CAAAAATTACCATTTTACCCTAAATTTCAAAAATTCCATTTTTTACACCAATTTTTC
Found at i:53232 original size:178 final size:177
Alignment explanation
Indices: 52899--53274 Score: 476
Period size: 178 Copynumber: 2.1 Consensus size: 177
52889 CTAAACTATG
* * *
52899 CAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACTCCGATTTTCCAAAAAT
1 CAAAAATTACCATTTTACCCCCAAACTCTCAAAAATTCCATTTTTAACTCCAATTTTCCAAAAAT
* *
52964 TACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTTACCCTAATTTTTTTCCAAAAATTACC
66 TACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTTACCCCAATTTTTTTCCAAAAATTACC
* * * *
53029 ATTTTACCCTCAAATTTCCAAAATTCCATTTTTGACAC-C-AATTTTTC
131 ATTTTACCCTCAAATGTCAAAAATTCCATTTTTAAC-CTCGAA-CTTTC
* * *
53076 CAAAAATTACCATTTTACCCTCGAACTCTCAAAAATTCCATTTTTCACAT-CAATTTTTCCAAAA
1 CAAAAATTACCATTTTACCCCCAAACTCTCAAAAATTCCATTTTTAAC-TCCAA-TTTTCCAAAA
* **
53140 ATTACCATTTTACCC-CTAAACTTTCAAAAATTGTATTTTTTACCCCAATTTTTTT-CAAAAATT
64 ATTACCATTTTACCCTC-AAACTTCCAAAAATTCCATTTTTTACCCCAATTTTTTTCCAAAAATT
* *
53203 ACCATTTTATCCT-AAGATGTCTAAAAATTCTATTTTTAACCTCGAACTTTC
128 ACCATTTTACCCTCAA-ATGTC-AAAAATTCCATTTTTAACCTCGAACTTTC
* *
53254 CCAAAATTACCATTTTGCCCC
1 CAAAAATTACCATTTTACCCC
53275 TGAATGTCCA
Statistics
Matches: 172, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
176 2 0.01
177 71 0.41
178 97 0.56
179 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.39
Consensus pattern (177 bp):
CAAAAATTACCATTTTACCCCCAAACTCTCAAAAATTCCATTTTTAACTCCAATTTTCCAAAAAT
TACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTTACCCCAATTTTTTTCCAAAAATTACC
ATTTTACCCTCAAATGTCAAAAATTCCATTTTTAACCTCGAACTTTC
Found at i:53442 original size:28 final size:28
Alignment explanation
Indices: 53404--53626 Score: 160
Period size: 28 Copynumber: 7.8 Consensus size: 28
53394 AAACTATCAA
53404 AAAATTACCATTTTACCCTCGAACTTCC
1 AAAATTACCATTTTACCCTCGAACTTCC
**
53432 AAAAGTT-CCATTTTTACCC-CGATTTATCC
1 AAAA-TTACCA-TTTTACCCTCGAACT-TCC
53461 AAAAAATTACCATTTTACCCTCGAACTTCC
1 --AAAATTACCATTTTACCCTCGAACTTCC
* *
53491 AAAAATT-CTATTTTGACCCT--AATTTTGCC
1 -AAAATTACCATTTT-ACCCTCGAA-CTT-CC
* *
53520 AAAATTACCATTTTACCCCCGAA-TATCT
1 AAAATTACCATTTTACCCTCGAACT-TCC
*
53548 AAAATT-CCATTTTTGACCCT-AAACTTTCCC
1 AAAATTACCA-TTTT-ACCCTCGAAC-TT-CC
*
53578 AAAATTACCATTTTGCCC-CTGAA-TGTCC
1 AAAATTACCATTTTACCCTC-GAACT-TCC
53606 AAAATTACCATTTTACCCTCG
1 AAAATTACCATTTTACCCTCG
53627 TGTATCCAAA
Statistics
Matches: 156, Mismatches: 15, Indels: 48
0.71 0.07 0.22
Matches are distributed among these distances:
27 5 0.03
28 64 0.41
29 44 0.28
30 29 0.19
31 14 0.09
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (28 bp):
AAAATTACCATTTTACCCTCGAACTTCC
Found at i:53610 original size:58 final size:58
Alignment explanation
Indices: 53390--53619 Score: 224
Period size: 59 Copynumber: 3.9 Consensus size: 58
53380 CCCTAAAAGT
* *
53390 CCCTAAACTATCAAAAAATTACCATTTTACCCTCGAACTTCCAAAAGTTCCATTTTT-A
1 CCCTAAACTTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAA-TTCCATTTTTGA
** * *
53448 CCC-CGATTTATCCAAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCTA-TTTTGA
1 CCCTAAACTT-TCC-AAAAATTACCATTTTACCCTCGAACTTCC-AAAATTCCATTTTTGA
* * *
53507 CCCT-AATTTTGCC-AAAATTACCATTTTACCCCCGAA-TATCTAAAATTCCATTTTTGA
1 CCCTAAACTTT-CCAAAAATTACCATTTTACCCTCGAACT-TCCAAAATTCCATTTTTGA
* *
53564 CCCTAAACTTTCCCAAAATTACCATTTTGCCC-CTGAA-TGTCCAAAATTACCATTTT
1 CCCTAAACTTTCCAAAAATTACCATTTTACCCTC-GAACT-TCCAAAATT-CCATTTT
53620 ACCCTCGTGT
Statistics
Matches: 146, Mismatches: 14, Indels: 23
0.80 0.08 0.13
Matches are distributed among these distances:
56 9 0.06
57 39 0.27
58 44 0.30
59 50 0.34
60 4 0.03
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (58 bp):
CCCTAAACTTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAATTCCATTTTTGA
Found at i:61425 original size:23 final size:23
Alignment explanation
Indices: 61320--61425 Score: 124
Period size: 23 Copynumber: 4.5 Consensus size: 23
61310 AGCACGTCTC
*
61320 GTGCTCTCTGTTCTTAGCACTGTGT
1 GTGCTCTCTG-T-TTAGCACTTTGT
*
61345 GTGCTCTCTGATTAGCACTTTGT
1 GTGCTCTCTGTTTAGCACTTTGT
* *
61368 GTGCTCTCTGATTAGTACTTTGT
1 GTGCTCTCTGTTTAGCACTTTGT
* *
61391 GTACTCTTTGTTTAGCA-TTGTGT
1 GTGCTCTCTGTTTAGCACTT-TGT
61414 GTGCTCTCTGTT
1 GTGCTCTCTGTT
61426 GCCCAACACT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
22 2 0.03
23 59 0.83
25 10 0.14
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (23 bp):
GTGCTCTCTGTTTAGCACTTTGT
Found at i:73822 original size:13 final size:13
Alignment explanation
Indices: 73804--73831 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73794 AAAAATCTAG
73804 AGAAATGATGAAA
1 AGAAATGATGAAA
73817 AGAAATGATGAAA
1 AGAAATGATGAAA
73830 AG
1 AG
73832 GCTATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.25, T:0.14
Consensus pattern (13 bp):
AGAAATGATGAAA
Done.