Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000274.1 Kokia drynarioides strain JFW-HI SEQ_111021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2339
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:2202 original size:17 final size:17

Alignment explanation


    Indices: 2169--2203  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2159 TATTTGTTAG

                   *         
       2169 TACATTTGCATTGTAAT
          1 TACATTTCCATTGTAAT

                        *    
       2186 TACATTTCCATTTTAAT
          1 TACATTTCCATTGTAAT

             
       2203 T
          1 T

       2204 TGTATAATAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51


Consensus pattern (17 bp):   
TACATTTCCATTGTAAT
Done.