Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002745.1 Kokia drynarioides strain JFW-HI SEQ_115053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2215
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:1776 original size:46 final size:46

Alignment explanation


    Indices: 1723--1836  Score: 228
    Period size: 46  Copynumber: 2.5  Consensus size: 46

       1713 TGTTAGATTA

                                                          
       1723 AACTTGTGATGGTTCCATTTTGGACATTTTGAAACCTTCAGTTGTG
          1 AACTTGTGATGGTTCCATTTTGGACATTTTGAAACCTTCAGTTGTG

                                                          
       1769 AACTTGTGATGGTTCCATTTTGGACATTTTGAAACCTTCAGTTGTG
          1 AACTTGTGATGGTTCCATTTTGGACATTTTGAAACCTTCAGTTGTG

                                  
       1815 AACTTGTGATGGTTCCATTTTG
          1 AACTTGTGATGGTTCCATTTTG

       1837 TATTAACACA


Statistics
Matches: 68,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   68  1.00

ACGTcount: A:0.21, C:0.15, G:0.22, T:0.42


Consensus pattern (46 bp):   
AACTTGTGATGGTTCCATTTTGGACATTTTGAAACCTTCAGTTGTG
Done.