Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002750.1 Kokia drynarioides strain JFW-HI SEQ_115064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7186
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34


Found at i:4991 original size:28 final size:28

Alignment explanation


    Indices: 4960--5020  Score: 79
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       4950 AAAAAAAGGC

                *              *   *     
       4960 ATTTTGATTTTTTTA-ATTTAATGATTAA
          1 ATTTAGATTTTTTTATATTCAA-AATTAA

                                        
       4988 ATTTAGATTTTTTTATATTCAAAATTAA
          1 ATTTAGATTTTTTTATATTCAAAATTAA

                 
       5016 ATTTA
          1 ATTTA

       5021 ATTAAAATAA


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  28   24  0.83
  29    5  0.17

ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57


Consensus pattern (28 bp):   
ATTTAGATTTTTTTATATTCAAAATTAA
Done.