Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002752.1 Kokia drynarioides strain JFW-HI SEQ_115067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 41601
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34

Warning! 114 characters in sequence are not A, C, G, or T


Found at i:31512 original size:21 final size:21

Alignment explanation


    Indices: 31486--31527  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      31476 TAAAATTGTA

                 *                
      31486 TAAAAAAGTTAAAAAATTATTT
          1 TAAAATAGTT-AAAAATTATTT

                  *             
      31508 TAAAATGGTTAAAAATTATT
          1 TAAAATAGTTAAAAATTATT

      31528 AATTACCTCG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   10  0.56
  22    8  0.44

ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38


Consensus pattern (21 bp):   
TAAAATAGTTAAAAATTATTT

Found at i:41036 original size:17 final size:18

Alignment explanation


    Indices: 41016--41058  Score: 54
    Period size: 17  Copynumber: 2.5  Consensus size: 18

      41006 AATCATTAAG

                 *     *      
      41016 ATTATTGTAATGTT-TAT
          1 ATTATAGTAATATTATAT

                              
      41033 ATTATAGTAATATTATAT
          1 ATTATAGTAATATTATAT

                     
      41051 ATT-TAGTA
          1 ATTATAGTA

      41059 TAAGTATTAC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  17   17  0.74
  18    6  0.26

ACGTcount: A:0.37, C:0.00, G:0.09, T:0.53


Consensus pattern (18 bp):   
ATTATAGTAATATTATAT
Done.