Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000276.1 Kokia drynarioides strain JFW-HI SEQ_111024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1137
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33


Found at i:795 original size:43 final size:43

Alignment explanation


    Indices: 732--823  Score: 148
    Period size: 43  Copynumber: 2.1  Consensus size: 43

        722 CCTGTGCCAA

                  *                         *          
        732 ACCGTGTGCATACACAAAATACCCTTACATGGTCATGCCCTAG
          1 ACCGTGAGCATACACAAAATACCCTTACATGGCCATGCCCTAG

                           *                     *     
        775 ACCGTGAGCATACACGAAATACCCTTACATGGCCATGTCCTAG
          1 ACCGTGAGCATACACAAAATACCCTTACATGGCCATGCCCTAG

                  
        818 ACCGTG
          1 ACCGTG

        824 TTTCAAGCTA


Statistics
Matches: 45,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  43   45  1.00

ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22


Consensus pattern (43 bp):   
ACCGTGAGCATACACAAAATACCCTTACATGGCCATGCCCTAG
Done.